Wall clock time and date at job start Mon Mar 30 2020 01:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38255 * 119.87819 * 2 1 4 4 C 1.37987 * 120.22239 * 180.25470 * 3 2 1 5 5 C 1.39701 * 119.98647 * 359.49352 * 4 3 2 6 6 C 1.43195 * 120.11549 * 180.27276 * 5 4 3 7 7 N 4.80251 * 137.04767 * 359.97438 * 3 1 2 8 8 C 1.39493 * 119.76546 * 0.25292 * 5 4 3 9 9 C 1.38633 * 119.77360 * 359.97438 * 8 5 4 10 10 O 1.35762 * 119.99111 * 180.02562 * 9 8 5 11 11 C 1.34830 * 117.00194 * 354.39998 * 10 9 8 12 12 H 1.08000 * 120.00133 * 5.06200 * 11 10 9 13 13 C 1.38652 * 119.99894 * 185.06434 * 11 10 9 14 14 N 1.31551 * 119.99912 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00051 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47543 * 89.99868 * 15 13 11 17 17 H 1.48508 * 109.47087 * 210.00154 * 15 13 11 18 18 H 1.48498 * 109.47089 * 329.99594 * 15 13 11 19 19 H 1.08998 * 109.47396 * 270.25413 * 1 2 3 20 20 H 1.08999 * 109.47262 * 30.25220 * 1 2 3 21 21 H 1.08999 * 109.47325 * 150.25153 * 1 2 3 22 22 H 1.07997 * 119.88770 * 0.02562 * 3 2 1 23 23 H 1.08001 * 120.00784 * 179.77074 * 4 3 2 24 24 H 1.07994 * 120.11082 * 179.97438 * 8 5 4 25 25 H 0.97009 * 120.00105 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1988 0.0000 4 6 3.5755 1.2071 -0.0053 5 6 4.2810 0.0013 0.0000 6 6 5.7130 0.0067 0.0004 7 7 6.8490 0.0110 0.0015 8 6 3.5856 -1.2079 0.0053 9 6 2.1993 -1.2048 0.0058 10 8 1.5180 -2.3791 0.0115 11 6 2.2450 -3.5091 -0.1008 12 1 3.3238 -3.4588 -0.1075 13 6 1.6075 -4.7357 -0.2076 14 7 2.3167 -5.8382 -0.3177 15 14 -0.2585 -4.8227 -0.1968 16 1 -0.7672 -4.7169 -1.5879 17 1 -0.6903 -6.1162 0.3912 18 1 -0.8014 -3.7042 0.6152 19 1 -0.3634 0.0046 1.0276 20 1 -0.3634 0.8877 -0.5177 21 1 -0.3634 -0.8922 -0.5099 22 1 1.6519 2.1319 0.0004 23 1 4.1100 2.1456 -0.0090 24 1 4.1254 -2.1433 0.0090 25 1 1.8707 -6.6964 -0.3928 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229950609.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:50 Heat of formation + Delta-G solvation = 3.366327 kcal Electronic energy + Delta-G solvation = -12080.216473 eV Core-core repulsion = 9830.888252 eV Total energy + Delta-G solvation = -2249.328220 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.069 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.10340 -38.73014 -37.36160 -34.48962 -33.66379 -30.99986 -28.34423 -27.35560 -23.45743 -23.07629 -20.33032 -19.83702 -17.54730 -16.76654 -16.33644 -15.93692 -15.75377 -14.98889 -14.83204 -14.54219 -14.22139 -14.00207 -13.91669 -13.76731 -12.94480 -12.81638 -12.55136 -12.29615 -12.15506 -11.99358 -11.43720 -10.90113 -9.69285 -9.10914 -8.48135 -6.21912 -0.13944 0.60742 1.36468 1.40040 1.54952 1.57603 1.94610 2.30602 2.81745 2.88211 3.05111 3.14392 4.02202 4.13432 4.26416 4.52272 4.78489 4.90038 4.93622 4.98796 5.31329 5.40358 5.44016 5.54023 5.76125 5.83681 6.14781 6.38809 6.85821 7.56421 8.63373 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.033926 B = 0.011143 C = 0.008430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.126045 B = 2512.078419 C = 3320.491000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.117 4.117 3 C -0.068 4.068 4 C -0.116 4.116 5 C -0.010 4.010 6 C 0.283 3.717 7 N -0.466 5.466 8 C -0.188 4.188 9 C 0.118 3.882 10 O -0.229 6.229 11 C -0.401 4.401 12 H 0.077 0.923 13 C 0.010 3.990 14 N -0.926 5.926 15 Si 0.971 3.029 16 H -0.265 1.265 17 H -0.274 1.274 18 H -0.251 1.251 19 H 0.076 0.924 20 H 0.100 0.900 21 H 0.046 0.954 22 H 0.180 0.820 23 H 0.161 0.839 24 H 0.110 0.890 25 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.357 13.739 0.521 15.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.119 4.119 3 C -0.086 4.086 4 C -0.137 4.137 5 C -0.014 4.014 6 C -0.031 4.031 7 N -0.142 5.142 8 C -0.210 4.210 9 C 0.068 3.932 10 O -0.136 6.136 11 C -0.477 4.477 12 H 0.095 0.905 13 C -0.189 4.189 14 N -0.566 5.566 15 Si 0.792 3.208 16 H -0.190 1.190 17 H -0.199 1.199 18 H -0.174 1.174 19 H 0.094 0.906 20 H 0.119 0.881 21 H 0.065 0.935 22 H 0.197 0.803 23 H 0.178 0.822 24 H 0.128 0.872 25 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.820 13.471 0.524 14.317 hybrid contribution -0.231 -1.143 -0.038 1.167 sum -5.052 12.328 0.486 13.332 Atomic orbital electron populations 1.20681 0.89265 1.03241 1.02934 1.19827 0.97777 0.89926 1.04390 1.21094 0.92978 0.97307 0.97197 1.21218 0.94557 0.95852 1.02023 1.15818 0.83177 0.94898 1.07471 1.25999 0.92904 0.92037 0.92193 1.81168 1.12951 1.09178 1.10934 1.21136 0.94343 0.97497 1.07978 1.19242 0.90210 0.87047 0.96662 1.83545 1.35447 1.11789 1.82810 1.20661 0.91846 0.83004 1.52193 0.90533 1.25318 1.05208 0.93078 0.95273 1.69747 1.38567 0.98814 1.49475 0.85208 0.77570 0.78393 0.79579 1.18994 1.19917 1.17444 0.90589 0.88143 0.93454 0.80267 0.82165 0.87227 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.69 9.78 71.23 0.70 -1.99 15 2 C -0.12 -3.61 5.90 -19.69 -0.12 -3.72 15 3 C -0.07 -1.53 9.67 22.21 0.21 -1.32 15 4 C -0.12 -2.81 9.75 22.56 0.22 -2.59 15 5 C -0.01 -0.33 5.73 -21.38 -0.12 -0.46 15 6 C 0.28 9.81 15.33 88.33 1.35 11.16 15 7 N -0.47 -17.46 18.54 19.00 0.35 -17.11 15 8 C -0.19 -7.69 8.87 22.67 0.20 -7.49 15 9 C 0.12 4.88 6.61 22.54 0.15 5.03 15 10 O -0.23 -11.29 7.62 -22.87 -0.17 -11.46 15 11 C -0.40 -22.53 9.94 67.92 0.68 -21.86 15 12 H 0.08 4.60 5.43 -2.91 -0.02 4.58 15 13 C 0.01 0.54 5.49 84.83 0.47 1.01 15 14 N -0.93 -54.49 13.96 21.61 0.30 -54.19 15 15 Si 0.97 43.04 28.62 68.60 1.96 45.01 15 16 H -0.27 -11.28 7.11 99.48 0.71 -10.57 15 17 H -0.27 -11.61 7.11 99.48 0.71 -10.91 15 18 H -0.25 -10.69 7.11 99.48 0.71 -9.98 15 19 H 0.08 1.80 8.14 -2.39 -0.02 1.78 15 20 H 0.10 1.76 8.08 -2.39 -0.02 1.74 15 21 H 0.05 1.45 7.52 -2.39 -0.02 1.43 15 22 H 0.18 2.30 8.06 -2.91 -0.02 2.27 15 23 H 0.16 2.73 8.06 -2.91 -0.02 2.71 15 24 H 0.11 5.16 5.63 -2.91 -0.02 5.15 15 25 H 0.28 15.38 8.31 -92.70 -0.77 14.60 15 Total: -1.00 -64.56 236.38 7.40 -57.17 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: 1.21 Total: 2.81 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 3.74 Total: -22.23 kcal Atomic # 7 Polarization: -71.95 SS G_CDS: 0.65 Total: -71.30 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.17 Total: -11.46 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.96 Total: 45.01 kcal Total: -64.56 7.40 -57.17 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229950609.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.533 kcal (2) G-P(sol) polarization free energy of solvation -64.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds