Wall clock time and date at job start Mon Mar 30 2020 02:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35968 * 126.43669 * 2 1 4 4 N 1.30607 * 109.98209 * 179.87348 * 3 2 1 5 5 C 1.34040 * 109.76510 * 0.39272 * 4 3 2 6 6 C 1.37596 * 126.44125 * 180.30512 * 2 1 3 7 7 C 1.38865 * 135.36225 * 359.97179 * 6 2 1 8 8 C 1.38600 * 119.79573 * 179.97438 * 7 6 2 9 9 N 1.31443 * 122.25411 * 0.06259 * 8 7 6 10 10 C 1.33895 * 122.04642 * 359.97121 * 9 8 7 11 11 C 1.40612 * 120.42118 * 180.02562 * 10 9 8 12 12 H 1.07995 * 119.99568 * 179.97438 * 11 10 9 13 13 C 1.40168 * 120.00267 * 359.97038 * 11 10 9 14 14 N 1.30700 * 120.00282 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00176 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47258 * 90.00358 * 15 13 11 17 17 H 1.48502 * 109.47531 * 210.00199 * 15 13 11 18 18 H 1.48502 * 109.47198 * 330.00326 * 15 13 11 19 19 H 1.09002 * 109.47391 * 269.68953 * 1 2 3 20 20 H 1.09001 * 109.46813 * 149.69009 * 1 2 3 21 21 H 1.09004 * 109.47041 * 29.69136 * 1 2 3 22 22 H 1.07999 * 125.01379 * 0.03464 * 3 2 1 23 23 H 1.07999 * 120.10300 * 359.97438 * 7 6 2 24 24 H 1.07991 * 118.87103 * 180.02562 * 8 7 6 25 25 H 0.97001 * 120.00425 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2725 1.0939 0.0000 4 7 3.5251 0.7239 0.0027 5 6 3.6025 -0.6142 -0.0040 6 6 2.2823 -1.1069 -0.0059 7 6 2.0843 -2.4813 -0.0127 8 6 3.1766 -3.3345 -0.0180 9 7 4.4137 -2.8903 -0.0156 10 6 4.6988 -1.5820 -0.0084 11 6 6.0351 -1.1445 -0.0065 12 1 6.2572 -0.0877 -0.0011 13 6 7.0789 -2.0800 -0.0116 14 7 6.8101 -3.3591 -0.0185 15 14 8.8541 -1.4988 -0.0084 16 1 9.3245 -1.3524 1.3925 17 1 9.7019 -2.4932 -0.7138 18 1 8.9473 -0.1886 -0.7012 19 1 -0.3634 -0.0056 1.0276 20 1 -0.3633 -0.8872 -0.5187 21 1 -0.3633 0.8928 -0.5091 22 1 1.9290 2.1178 0.0005 23 1 1.0823 -2.8843 -0.0139 24 1 3.0054 -4.4007 -0.0237 25 1 7.5325 -4.0065 -0.0224 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236097639.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:04 Heat of formation + Delta-G solvation = 80.931874 kcal Electronic energy + Delta-G solvation = -12420.068459 eV Core-core repulsion = 10206.396484 eV Total energy + Delta-G solvation = -2213.671975 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.76133 -36.62631 -33.70290 -33.10409 -29.81694 -28.71478 -26.27856 -25.52417 -22.06569 -21.16042 -19.60136 -17.50926 -16.34907 -15.66202 -14.97314 -14.86684 -14.14255 -13.25337 -13.18639 -12.61429 -12.45005 -12.17950 -11.49362 -11.49237 -11.08134 -10.95510 -10.58408 -10.18536 -9.56934 -9.03025 -8.78445 -7.67448 -7.56736 -7.05522 -6.56215 -4.52227 2.35726 2.99473 3.05471 3.10918 3.28660 3.59487 3.87378 4.07044 4.66691 5.16589 5.41691 5.49956 5.67589 5.73628 5.90864 6.26332 6.44343 6.66131 6.77679 6.94291 7.17332 7.49628 7.75955 7.98699 8.18440 8.29451 8.46956 8.74851 9.23238 10.04803 10.22996 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.053082 B = 0.010718 C = 0.008961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.355467 B = 2611.771068 C = 3123.981751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.499 5.499 3 C 0.141 3.859 4 N -0.454 5.454 5 C -0.087 4.087 6 C 0.113 3.887 7 C -0.351 4.351 8 C 0.163 3.837 9 N -0.519 5.519 10 C 0.302 3.698 11 C -0.373 4.373 12 H 0.096 0.904 13 C 0.059 3.941 14 N -0.690 5.690 15 Si 0.917 3.083 16 H -0.266 1.266 17 H -0.274 1.274 18 H -0.257 1.257 19 H 0.060 0.940 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.190 0.810 23 H 0.087 0.913 24 H 0.122 0.878 25 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.449 2.964 -0.068 6.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.192 5.192 3 C -0.138 4.138 4 N -0.171 5.171 5 C -0.213 4.213 6 C -0.001 4.001 7 C -0.381 4.381 8 C 0.000 4.000 9 N -0.235 5.235 10 C 0.175 3.825 11 C -0.403 4.403 12 H 0.114 0.886 13 C -0.170 4.170 14 N -0.310 5.310 15 Si 0.740 3.260 16 H -0.191 1.191 17 H -0.199 1.199 18 H -0.181 1.181 19 H 0.079 0.921 20 H 0.092 0.908 21 H 0.093 0.907 22 H 0.207 0.793 23 H 0.106 0.894 24 H 0.140 0.860 25 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.066 2.732 -0.069 4.899 hybrid contribution -1.103 0.318 0.021 1.148 sum -5.169 3.050 -0.048 6.002 Atomic orbital electron populations 1.21651 0.78334 1.03139 1.01995 1.44813 1.05800 1.06214 1.62394 1.24605 0.85619 0.92214 1.11397 1.69475 1.17792 1.13081 1.16768 1.21026 0.93194 0.89671 1.17368 1.18784 0.90751 0.89145 1.01451 1.19835 0.98529 0.89117 1.30570 1.22149 0.88538 0.97769 0.91573 1.68875 1.18032 1.13035 1.23540 1.19066 0.90505 0.85067 0.87887 1.19811 0.89114 0.95203 1.36177 0.88586 1.26304 1.02167 0.94602 0.93881 1.70137 1.34347 1.01716 1.24756 0.86159 0.80278 0.80033 0.79549 1.19064 1.19864 1.18065 0.92149 0.90782 0.90709 0.79283 0.89427 0.86034 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.28 11.20 59.85 0.67 1.95 15 2 N -0.50 -10.16 3.20 -123.07 -0.39 -10.55 15 3 C 0.14 2.91 12.52 -89.44 -1.12 1.79 15 4 N -0.45 -11.51 11.22 -10.51 -0.12 -11.63 15 5 C -0.09 -2.39 7.23 -82.68 -0.60 -2.99 15 6 C 0.11 2.80 6.93 -84.03 -0.58 2.21 15 7 C -0.35 -8.40 10.10 -39.22 -0.40 -8.79 15 8 C 0.16 4.08 11.11 -17.58 -0.20 3.88 15 9 N -0.52 -14.69 7.89 -9.81 -0.08 -14.77 15 10 C 0.30 8.75 6.72 -82.86 -0.56 8.19 15 11 C -0.37 -10.33 9.18 -37.96 -0.35 -10.68 15 12 H 0.10 2.59 7.85 -52.49 -0.41 2.18 15 13 C 0.06 1.49 5.50 -17.31 -0.10 1.39 15 14 N -0.69 -18.03 11.49 55.56 0.64 -17.39 15 15 Si 0.92 18.43 29.56 -169.99 -5.02 13.40 15 16 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 17 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 18 H -0.26 -5.14 7.11 56.52 0.40 -4.74 15 19 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 20 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 21 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.19 2.88 8.06 -52.49 -0.42 2.46 15 23 H 0.09 1.83 8.06 -52.49 -0.42 1.41 15 24 H 0.12 2.64 8.06 -52.49 -0.42 2.22 15 25 H 0.28 6.46 8.29 -40.82 -0.34 6.12 15 LS Contribution 229.90 15.07 3.46 3.46 Total: -1.00 -32.50 229.90 -6.81 -39.31 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -2.08 Total: 1.19 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -3.22 Total: -3.03 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.05 Total: -54.34 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.02 Total: 13.40 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -32.50 -6.81 -39.31 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236097639.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.247 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds