Wall clock time and date at job start Mon Mar 30 2020 02:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35968 * 126.43669 * 2 1 4 4 N 1.30607 * 109.98209 * 179.87348 * 3 2 1 5 5 C 1.34040 * 109.76510 * 0.39272 * 4 3 2 6 6 C 1.37596 * 126.44125 * 180.30512 * 2 1 3 7 7 C 1.38865 * 135.36225 * 359.97179 * 6 2 1 8 8 C 1.38600 * 119.79573 * 179.97438 * 7 6 2 9 9 N 1.31443 * 122.25411 * 0.06259 * 8 7 6 10 10 C 1.33895 * 122.04642 * 359.97121 * 9 8 7 11 11 C 1.40612 * 120.42118 * 180.02562 * 10 9 8 12 12 H 1.07995 * 119.99568 * 179.97438 * 11 10 9 13 13 C 1.40168 * 120.00267 * 359.97038 * 11 10 9 14 14 N 1.30700 * 120.00282 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00176 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47258 * 90.00358 * 15 13 11 17 17 H 1.48502 * 109.47531 * 210.00199 * 15 13 11 18 18 H 1.48502 * 109.47198 * 330.00326 * 15 13 11 19 19 H 1.09002 * 109.47391 * 269.68953 * 1 2 3 20 20 H 1.09001 * 109.46813 * 149.69009 * 1 2 3 21 21 H 1.09004 * 109.47041 * 29.69136 * 1 2 3 22 22 H 1.07999 * 125.01379 * 0.03464 * 3 2 1 23 23 H 1.07999 * 120.10300 * 359.97438 * 7 6 2 24 24 H 1.07991 * 118.87103 * 180.02562 * 8 7 6 25 25 H 0.97001 * 120.00425 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2725 1.0939 0.0000 4 7 3.5251 0.7239 0.0027 5 6 3.6025 -0.6142 -0.0040 6 6 2.2823 -1.1069 -0.0059 7 6 2.0843 -2.4813 -0.0127 8 6 3.1766 -3.3345 -0.0180 9 7 4.4137 -2.8903 -0.0156 10 6 4.6988 -1.5820 -0.0084 11 6 6.0351 -1.1445 -0.0065 12 1 6.2572 -0.0877 -0.0011 13 6 7.0789 -2.0800 -0.0116 14 7 6.8101 -3.3591 -0.0185 15 14 8.8541 -1.4988 -0.0084 16 1 9.3245 -1.3524 1.3925 17 1 9.7019 -2.4932 -0.7138 18 1 8.9473 -0.1886 -0.7012 19 1 -0.3634 -0.0056 1.0276 20 1 -0.3633 -0.8872 -0.5187 21 1 -0.3633 0.8928 -0.5091 22 1 1.9290 2.1178 0.0005 23 1 1.0823 -2.8843 -0.0139 24 1 3.0054 -4.4007 -0.0237 25 1 7.5325 -4.0065 -0.0224 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236097639.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:04 Heat of formation + Delta-G solvation = 59.821693 kcal Electronic energy + Delta-G solvation = -12420.983865 eV Core-core repulsion = 10206.396484 eV Total energy + Delta-G solvation = -2214.587381 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.52167 -38.52311 -35.58433 -34.72371 -31.67508 -30.61570 -27.72530 -27.37727 -23.89097 -23.03604 -21.35530 -19.33693 -18.07666 -17.49244 -16.70743 -16.41505 -15.92813 -15.03072 -14.83158 -14.13233 -14.06574 -13.62387 -13.16855 -13.14085 -12.88313 -12.68502 -12.43025 -11.89688 -11.37669 -10.78381 -10.60945 -9.61646 -9.40233 -8.97231 -8.42768 -6.50441 0.51838 1.24003 1.40117 1.54478 1.57591 2.08068 2.21173 2.28093 2.77297 3.81333 3.90185 4.07905 4.08476 4.39612 4.49367 4.65379 4.68805 4.84384 4.98522 5.10660 5.35781 5.59798 5.87842 6.13339 6.20296 6.49726 6.72098 6.81378 7.42047 8.18653 8.32569 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.053082 B = 0.010718 C = 0.008961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.355467 B = 2611.771068 C = 3123.981751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.494 5.494 3 C 0.178 3.822 4 N -0.507 5.507 5 C -0.126 4.126 6 C 0.089 3.911 7 C -0.339 4.339 8 C 0.135 3.865 9 N -0.550 5.550 10 C 0.267 3.733 11 C -0.414 4.414 12 H 0.086 0.914 13 C 0.018 3.982 14 N -0.729 5.729 15 Si 0.997 3.003 16 H -0.258 1.258 17 H -0.258 1.258 18 H -0.258 1.258 19 H 0.080 0.920 20 H 0.079 0.921 21 H 0.116 0.884 22 H 0.249 0.751 23 H 0.120 0.880 24 H 0.147 0.853 25 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.934 4.205 -0.083 8.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.186 5.186 3 C -0.104 4.104 4 N -0.226 5.226 5 C -0.250 4.250 6 C -0.027 4.027 7 C -0.367 4.367 8 C -0.026 4.026 9 N -0.267 5.267 10 C 0.139 3.861 11 C -0.444 4.444 12 H 0.104 0.896 13 C -0.206 4.206 14 N -0.349 5.349 15 Si 0.815 3.185 16 H -0.182 1.182 17 H -0.181 1.181 18 H -0.182 1.182 19 H 0.098 0.902 20 H 0.098 0.902 21 H 0.134 0.866 22 H 0.264 0.736 23 H 0.138 0.862 24 H 0.165 0.835 25 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.626 3.936 -0.083 6.867 hybrid contribution -0.953 0.068 0.029 0.956 sum -6.579 4.004 -0.054 7.702 Atomic orbital electron populations 1.22134 0.74112 1.05573 1.04046 1.45197 1.08197 1.04524 1.60648 1.25791 0.84468 0.94352 1.05742 1.69435 1.20759 1.12339 1.20056 1.21251 0.94293 0.90844 1.18583 1.19000 0.90929 0.90522 1.02203 1.20133 0.99585 0.88941 1.28088 1.22643 0.88336 0.99380 0.92194 1.68812 1.19784 1.13240 1.24844 1.19520 0.91789 0.86022 0.88790 1.19982 0.90128 0.95304 1.39010 0.89590 1.27205 1.06365 0.94340 0.92729 1.70184 1.36268 1.02895 1.25525 0.85000 0.74100 0.79509 0.79875 1.18236 1.18138 1.18162 0.90182 0.90229 0.86587 0.73552 0.86213 0.83529 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.87 11.20 127.77 1.43 3.30 15 2 N -0.49 -18.53 3.20 -543.27 -1.74 -20.26 15 3 C 0.18 6.78 12.52 179.93 2.25 9.03 15 4 N -0.51 -25.64 11.22 -187.18 -2.10 -27.74 15 5 C -0.13 -7.07 7.23 41.54 0.30 -6.77 15 6 C 0.09 4.35 6.93 39.05 0.27 4.62 15 7 C -0.34 -15.91 10.10 22.51 0.23 -15.69 15 8 C 0.14 6.88 11.11 84.84 0.94 7.82 15 9 N -0.55 -32.39 7.89 -184.94 -1.46 -33.84 15 10 C 0.27 16.18 6.72 41.49 0.28 16.46 15 11 C -0.41 -24.15 9.18 23.32 0.21 -23.94 15 12 H 0.09 4.94 7.85 -2.91 -0.02 4.92 15 13 C 0.02 0.95 5.50 85.33 0.47 1.42 15 14 N -0.73 -39.46 11.49 21.86 0.25 -39.21 15 15 Si 1.00 38.72 29.56 68.60 2.03 40.75 15 16 H -0.26 -9.59 7.11 99.48 0.71 -8.89 15 17 H -0.26 -9.21 7.11 99.48 0.71 -8.50 15 18 H -0.26 -9.90 7.11 99.48 0.71 -9.20 15 19 H 0.08 1.58 8.14 -2.39 -0.02 1.56 15 20 H 0.08 1.78 8.14 -2.39 -0.02 1.76 15 21 H 0.12 1.75 8.14 -2.38 -0.02 1.73 15 22 H 0.25 6.11 8.06 -2.91 -0.02 6.08 15 23 H 0.12 4.70 8.06 -2.91 -0.02 4.68 15 24 H 0.15 6.40 8.06 -2.92 -0.02 6.38 15 25 H 0.29 13.75 8.29 -92.71 -0.77 12.98 15 Total: -1.00 -75.11 229.90 4.57 -70.54 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 1.20 Total: 13.51 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 6.39 Total: -3.74 kcal Atomic # 7 Polarization: -116.01 SS G_CDS: -5.04 Total: -121.05 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -75.11 4.57 -70.54 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236097639.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.357 kcal (2) G-P(sol) polarization free energy of solvation -75.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds