Wall clock time and date at job start Mon Mar 30 2020 01:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35651 * 117.00590 * 2 1 4 4 C 1.37999 * 120.18539 * 359.97438 * 3 2 1 5 5 C 1.39856 * 119.90124 * 180.02562 * 4 3 2 6 6 C 1.43203 * 119.86193 * 180.02562 * 5 4 3 7 7 N 5.83604 * 81.29294 * 359.97438 * 2 1 3 8 8 C 1.40305 * 120.27655 * 0.02562 * 5 4 3 9 9 C 1.36038 * 120.38317 * 359.72564 * 8 5 4 10 10 C 1.40962 * 120.08911 * 0.53252 * 9 8 5 11 11 C 1.40739 * 120.13795 * 179.75771 * 10 9 8 12 12 H 1.08002 * 120.00029 * 208.74508 * 11 10 9 13 13 C 1.40202 * 120.00350 * 28.74465 * 11 10 9 14 14 N 1.30692 * 120.00622 * 197.87216 * 13 11 10 15 15 Si 1.86804 * 119.99661 * 17.87641 * 13 11 10 16 16 H 1.48505 * 109.46997 * 270.00019 * 15 13 11 17 17 H 1.48503 * 109.47213 * 29.99522 * 15 13 11 18 18 H 1.48500 * 109.47430 * 150.00091 * 15 13 11 19 19 H 1.08995 * 109.47408 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47111 * 300.00501 * 1 2 3 21 21 H 1.09002 * 109.47331 * 59.99611 * 1 2 3 22 22 H 1.07994 * 120.04699 * 0.02562 * 4 3 2 23 23 H 1.08007 * 119.80403 * 180.02562 * 8 5 4 24 24 H 1.08004 * 119.95228 * 180.25750 * 9 8 5 25 25 H 0.97008 * 120.00028 * 355.45184 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2972 2.3685 -0.0005 5 6 1.9384 3.6114 -0.0011 6 6 1.1617 4.8144 -0.0011 7 7 0.5455 5.7688 -0.0026 8 6 3.3396 3.6845 -0.0016 9 6 4.0878 2.5484 0.0040 10 6 3.4580 1.2873 -0.0009 11 6 4.2311 0.1113 -0.0003 12 1 3.8443 -0.7896 -0.4534 13 6 5.5035 0.1091 0.5885 14 7 6.3563 -0.8379 0.2986 15 14 5.9800 1.4599 1.7877 16 1 6.5988 2.5864 1.0439 17 1 4.7679 1.9419 2.4975 18 1 6.9521 0.9252 2.7748 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 0.2185 2.3164 -0.0005 23 1 3.8269 4.6484 -0.0016 24 1 5.1659 2.6128 0.0077 25 1 6.0872 -1.5749 -0.2720 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238466173.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:44 Heat of formation + Delta-G solvation = -15.419963 kcal Electronic energy + Delta-G solvation = -12250.013215 eV Core-core repulsion = 9999.870360 eV Total energy + Delta-G solvation = -2250.142855 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.069 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.71330 -38.37338 -37.19708 -35.65894 -32.53816 -30.96021 -28.13443 -27.36978 -23.47007 -22.69310 -20.41396 -19.99660 -17.35038 -16.71346 -16.53364 -16.36957 -15.94316 -15.06756 -14.78310 -14.63916 -14.39724 -13.91419 -13.42227 -13.12637 -13.04567 -12.51459 -12.33876 -12.10503 -11.77172 -11.55697 -11.35177 -10.92122 -9.75831 -9.41497 -9.05658 -6.54319 0.17712 0.85478 1.42959 1.58011 1.83362 1.86079 2.08009 2.21649 2.76512 2.77902 3.31747 3.42479 4.11318 4.38359 4.41507 4.48131 4.68648 4.75533 4.88724 5.05493 5.33800 5.44296 5.51074 5.74443 5.90434 6.18763 6.33850 6.56748 6.73891 6.99615 7.89432 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.030491 B = 0.013521 C = 0.009905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.093061 B = 2070.313455 C = 2826.214575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.337 6.337 3 C 0.010 3.990 4 C -0.115 4.115 5 C -0.155 4.155 6 C 0.301 3.699 7 N -0.506 5.506 8 C -0.032 4.032 9 C -0.243 4.243 10 C 0.082 3.918 11 C -0.498 4.498 12 H 0.056 0.944 13 C 0.013 3.987 14 N -0.818 5.818 15 Si 1.097 2.903 16 H -0.244 1.244 17 H -0.256 1.256 18 H -0.282 1.282 19 H 0.111 0.889 20 H 0.057 0.943 21 H 0.056 0.944 22 H 0.134 0.866 23 H 0.138 0.862 24 H 0.127 0.873 25 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.121 2.031 1.328 4.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.251 6.251 3 C -0.035 4.035 4 C -0.137 4.137 5 C -0.161 4.161 6 C -0.010 4.010 7 N -0.185 5.185 8 C -0.053 4.053 9 C -0.262 4.262 10 C 0.078 3.922 11 C -0.526 4.526 12 H 0.074 0.926 13 C -0.204 4.204 14 N -0.439 5.439 15 Si 0.916 3.084 16 H -0.169 1.169 17 H -0.180 1.180 18 H -0.209 1.209 19 H 0.129 0.871 20 H 0.076 0.924 21 H 0.074 0.926 22 H 0.152 0.848 23 H 0.155 0.845 24 H 0.144 0.856 25 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.714 3.747 2.174 5.706 hybrid contribution -1.254 -1.541 -1.299 2.374 sum -4.968 2.206 0.875 5.505 Atomic orbital electron populations 1.23176 0.78134 1.04575 1.01459 1.85972 1.21843 1.27279 1.90052 1.19032 0.91878 0.83922 1.08637 1.20807 0.99170 0.90348 1.03328 1.15264 0.91408 0.85994 1.23405 1.25832 0.91936 0.92279 0.90924 1.81131 1.10465 1.11910 1.14982 1.20543 0.91292 0.98529 0.94927 1.20679 0.99585 0.91185 1.14760 1.17584 0.89575 0.94007 0.91028 1.20655 1.01766 0.97750 1.32472 0.92565 1.28537 0.91187 1.02815 0.97856 1.70542 1.35380 1.09704 1.28292 0.83349 0.77751 0.72747 0.74545 1.16933 1.17991 1.20875 0.87080 0.92422 0.92563 0.84814 0.84451 0.85609 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.81 113.37 1.11 1.71 15 2 O -0.34 -13.85 9.82 -89.66 -0.88 -14.73 15 3 C 0.01 0.43 6.71 23.02 0.15 0.59 15 4 C -0.12 -4.30 8.73 22.60 0.20 -4.10 15 5 C -0.16 -5.73 5.76 -21.14 -0.12 -5.85 15 6 C 0.30 10.93 15.31 88.33 1.35 12.28 15 7 N -0.51 -19.37 18.54 19.00 0.35 -19.02 15 8 C -0.03 -1.18 9.67 22.26 0.22 -0.96 15 9 C -0.24 -10.05 7.19 22.43 0.16 -9.88 15 10 C 0.08 3.83 5.15 -21.19 -0.11 3.72 15 11 C -0.50 -25.44 9.05 23.36 0.21 -25.23 15 12 H 0.06 3.12 7.87 -2.91 -0.02 3.10 15 13 C 0.01 0.64 5.41 85.34 0.46 1.10 15 14 N -0.82 -41.46 13.65 21.87 0.30 -41.16 15 15 Si 1.10 43.30 24.90 68.60 1.71 45.01 15 16 H -0.24 -8.55 6.43 99.48 0.64 -7.91 15 17 H -0.26 -9.93 7.04 99.48 0.70 -9.23 15 18 H -0.28 -10.85 7.11 99.48 0.71 -10.14 15 19 H 0.11 2.52 8.14 -2.39 -0.02 2.50 15 20 H 0.06 1.46 7.66 -2.39 -0.02 1.44 15 21 H 0.06 1.43 7.66 -2.39 -0.02 1.41 15 22 H 0.13 4.24 6.29 -2.91 -0.02 4.22 15 23 H 0.14 4.14 8.06 -2.91 -0.02 4.12 15 24 H 0.13 5.00 4.38 -2.91 -0.01 4.99 15 25 H 0.28 14.28 8.73 -92.70 -0.81 13.48 15 Total: -1.00 -54.77 229.07 6.22 -48.55 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.10 Total: 7.97 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: 3.64 Total: -26.62 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: 0.65 Total: -60.18 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.88 Total: -14.73 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.71 Total: 45.01 kcal Total: -54.77 6.22 -48.55 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238466173.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.128 kcal (2) G-P(sol) polarization free energy of solvation -54.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds