Wall clock time and date at job start Mon Mar 30 2020 02:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99846 * 2 1 4 4 H 1.48503 * 109.47033 * 269.99862 * 3 2 1 5 5 H 1.48500 * 109.47037 * 30.00211 * 3 2 1 6 6 H 1.48503 * 109.47088 * 149.99949 * 3 2 1 7 7 C 1.38815 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99615 * 0.02562 * 7 2 1 9 9 N 1.36928 * 120.00124 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00227 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47374 * 34.99882 * 10 9 7 12 12 C 1.53002 * 109.47037 * 275.00255 * 10 9 7 13 13 C 1.52997 * 109.46817 * 299.99555 * 12 10 9 14 14 C 1.53005 * 109.47452 * 300.00239 * 13 12 10 15 15 C 1.52999 * 109.47159 * 59.99536 * 14 13 12 16 16 C 1.52997 * 109.47317 * 300.00546 * 15 14 13 17 17 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 18 18 Cl 1.80301 * 109.47004 * 179.97438 * 16 15 14 19 19 H 0.97000 * 120.00257 * 0.02562 * 1 2 3 20 20 H 0.97001 * 120.00378 * 359.97438 * 9 7 2 21 21 H 1.08993 * 109.47662 * 59.99787 * 12 10 9 22 22 H 1.09002 * 109.47075 * 180.02562 * 12 10 9 23 23 H 1.09002 * 109.47153 * 60.00231 * 13 12 10 24 24 H 1.09001 * 109.47289 * 180.02562 * 13 12 10 25 25 H 1.09000 * 109.47360 * 180.02562 * 14 13 12 26 26 H 1.09002 * 109.46935 * 300.00125 * 14 13 12 27 27 H 1.08996 * 109.46929 * 179.97438 * 15 14 13 28 28 H 1.09002 * 109.46716 * 60.00455 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 1 3.5651 -3.2063 -0.5887 12 6 4.2577 -2.9756 1.4380 13 6 5.0257 -1.9433 2.2659 14 6 6.4132 -1.7311 1.6568 15 6 6.2676 -1.2264 0.2199 16 6 5.4996 -2.2587 -0.6080 17 1 6.0446 -3.2027 -0.6080 18 17 5.3275 -1.6635 -2.3012 19 1 -0.4850 0.8400 -0.0004 20 1 3.8647 -0.3621 0.0007 21 1 3.2694 -3.1268 1.8720 22 1 4.8031 -3.9194 1.4381 23 1 4.4807 -0.9993 2.2659 24 1 5.1298 -2.3031 3.2895 25 1 6.9604 -0.9960 2.2469 26 1 6.9582 -2.6751 1.6568 27 1 7.2560 -1.0748 -0.2138 28 1 5.7226 -0.2824 0.2199 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238525146.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:44 Heat of formation + Delta-G solvation = -17.471928 kcal Electronic energy + Delta-G solvation = -11905.017601 eV Core-core repulsion = 9788.186011 eV Total energy + Delta-G solvation = -2116.831590 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 203.077 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.54688 -35.14153 -33.68943 -31.23482 -30.12621 -28.60552 -23.37291 -22.12741 -21.79876 -18.53432 -17.81220 -15.39043 -14.72627 -14.52661 -14.03868 -13.76454 -12.70710 -12.65292 -12.43623 -12.18912 -11.77229 -11.19927 -10.98787 -10.86675 -10.37474 -10.30937 -10.27314 -10.10609 -9.81525 -9.51704 -9.44473 -8.87950 -7.23307 -5.73271 -3.07813 2.72668 3.39119 3.44043 3.48318 4.62844 4.85558 4.95396 5.19822 5.33917 5.42576 5.54965 5.58194 5.63282 5.85158 5.91221 6.03237 6.14111 6.27346 6.37893 6.51949 6.66709 6.80075 6.88504 8.01799 8.45176 9.23698 9.96316 10.15870 11.45273 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.031357 B = 0.014639 C = 0.012856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.740883 B = 1912.238848 C = 2177.526445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.006 3.994 3 Si 0.879 3.121 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.236 4.236 8 H 0.090 0.910 9 N -0.737 5.737 10 C 0.178 3.822 11 H 0.065 0.935 12 C -0.133 4.133 13 C -0.118 4.118 14 C -0.114 4.114 15 C -0.123 4.123 16 C -0.003 4.003 17 H 0.094 0.906 18 Cl -0.187 7.187 19 H 0.258 0.742 20 H 0.363 0.637 21 H 0.073 0.927 22 H 0.048 0.952 23 H 0.073 0.927 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.571 -4.307 1.905 14.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.189 4.189 3 Si 0.710 3.290 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.366 4.366 8 H 0.108 0.892 9 N -0.381 5.381 10 C 0.068 3.932 11 H 0.083 0.917 12 C -0.174 4.174 13 C -0.155 4.155 14 C -0.152 4.152 15 C -0.161 4.161 16 C -0.048 4.048 17 H 0.113 0.887 18 Cl -0.160 7.160 19 H 0.069 0.931 20 H 0.197 0.803 21 H 0.091 0.909 22 H 0.067 0.933 23 H 0.092 0.908 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.300 -4.315 1.758 14.093 hybrid contribution 0.538 1.285 -0.086 1.396 sum 13.839 -3.030 1.672 14.265 Atomic orbital electron populations 1.69694 1.05057 1.25687 1.57865 1.24605 0.95126 0.96989 1.02202 0.86633 0.79135 0.85355 0.77910 1.20989 1.21868 1.20449 1.19026 0.80455 0.94623 1.42494 0.89208 1.42712 1.03919 1.01515 1.89966 1.20416 0.88769 0.90459 0.93587 0.91691 1.22140 1.00652 0.96850 0.97735 1.21471 0.94955 1.01189 0.97919 1.21522 0.98007 1.00695 0.94935 1.21843 0.99847 0.99232 0.95202 1.24509 1.00084 0.98581 0.81623 0.88745 1.98705 1.98566 1.90847 1.27909 0.93149 0.80299 0.90873 0.93312 0.90824 0.92852 0.91955 0.92267 0.91571 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.46 13.97 55.49 0.78 -28.69 15 2 C 0.01 0.18 5.50 -17.43 -0.10 0.09 15 3 Si 0.88 22.44 27.74 -169.99 -4.71 17.73 15 4 H -0.28 -7.30 7.11 56.52 0.40 -6.90 15 5 H -0.29 -7.55 7.11 56.52 0.40 -7.14 15 6 H -0.28 -6.64 6.52 56.52 0.37 -6.27 15 7 C -0.24 -6.55 10.41 -15.06 -0.16 -6.71 15 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 15 9 N -0.74 -16.96 3.72 -53.43 -0.20 -17.16 15 10 C 0.18 3.31 2.61 -67.93 -0.18 3.13 15 11 H 0.07 1.28 8.08 -51.93 -0.42 0.86 15 12 C -0.13 -2.18 5.61 -26.73 -0.15 -2.33 15 13 C -0.12 -1.80 5.77 -26.73 -0.15 -1.95 15 14 C -0.11 -1.47 5.92 -26.73 -0.16 -1.63 15 15 C -0.12 -1.79 5.16 -26.73 -0.14 -1.92 15 16 C 0.00 -0.05 2.98 -26.73 -0.08 -0.13 15 17 H 0.09 1.24 8.14 -51.93 -0.42 0.82 15 18 Cl -0.19 -3.30 28.28 -51.86 -1.47 -4.77 15 19 H 0.26 7.80 8.31 -40.82 -0.34 7.46 15 20 H 0.36 8.38 3.92 -40.82 -0.16 8.22 15 21 H 0.07 1.34 8.14 -51.93 -0.42 0.92 15 22 H 0.05 0.67 8.14 -51.93 -0.42 0.24 15 23 H 0.07 1.34 7.60 -51.93 -0.39 0.94 15 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 15 27 H 0.07 0.84 8.14 -51.93 -0.42 0.41 15 28 H 0.07 1.26 6.51 -51.93 -0.34 0.92 15 LS Contribution 237.87 15.07 3.58 3.58 Total: -1.00 -30.19 237.87 -6.99 -37.18 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -3.86 Total: 3.57 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -1.11 Total: -11.45 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.58 Total: -45.84 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.71 Total: 17.73 kcal Atomic # 17 Polarization: -3.30 SS G_CDS: -1.47 Total: -4.77 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -30.19 -6.99 -37.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238525146.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.707 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds