Wall clock time and date at job start Mon Mar 30 2020 02:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37975 * 120.55061 * 2 1 4 4 N 1.32367 * 121.40594 * 180.02562 * 3 2 1 5 5 C 1.31500 * 122.47149 * 359.97438 * 4 3 2 6 6 C 1.40327 * 120.19316 * 0.27717 * 5 4 3 7 7 N 1.33823 * 134.08699 * 180.44075 * 6 5 4 8 8 C 1.32492 * 109.74547 * 179.53422 * 7 6 5 9 9 C 1.40207 * 125.30552 * 179.69475 * 8 7 6 10 10 H 1.08001 * 120.00402 * 180.02562 * 9 8 7 11 11 C 1.40355 * 119.99406 * 0.04633 * 9 8 7 12 12 N 1.30580 * 120.00465 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99499 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47240 * 60.00138 * 13 11 9 15 15 H 1.48505 * 109.46871 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47522 * 299.99964 * 13 11 9 17 17 N 1.37976 * 109.39681 * 359.73617 * 8 7 6 18 18 H 0.97001 * 126.52464 * 180.02562 * 17 8 7 19 19 C 1.37419 * 106.94801 * 359.97438 * 17 8 7 20 20 H 1.09005 * 109.47208 * 90.00242 * 1 2 3 21 21 H 1.08998 * 109.47161 * 209.99734 * 1 2 3 22 22 H 1.09000 * 109.47328 * 330.00215 * 1 2 3 23 23 H 1.08001 * 119.29770 * 0.02562 * 3 2 1 24 24 H 1.08002 * 119.89915 * 179.97438 * 5 4 3 25 25 H 0.96997 * 119.99973 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2082 1.1882 0.0000 4 7 3.5318 1.2080 -0.0005 5 6 4.2542 0.1092 -0.0005 6 6 3.6286 -1.1468 -0.0059 7 7 4.0737 -2.4088 0.0001 8 6 3.0467 -3.2458 0.0002 9 6 3.1413 -4.6447 -0.0005 10 1 2.2446 -5.2466 -0.0007 11 6 4.4015 -5.2626 -0.0004 12 7 5.4857 -4.5349 -0.0002 13 14 4.5276 -7.1264 -0.0005 14 1 3.8628 -7.6675 -1.2132 15 1 5.9580 -7.5257 -0.0010 16 1 3.8625 -7.6677 1.2119 17 7 1.8693 -2.5264 0.0001 18 1 0.9702 -2.8905 0.0005 19 6 2.2129 -1.1958 0.0005 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 1.6658 2.1221 0.0004 24 1 5.3323 0.1738 -0.0014 25 1 6.3565 -4.9620 -0.0005 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238543873.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:48 Heat of formation + Delta-G solvation = 58.161845 kcal Electronic energy + Delta-G solvation = -12351.809705 eV Core-core repulsion = 10137.150348 eV Total energy + Delta-G solvation = -2214.659357 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.62493 -37.18937 -33.74695 -32.93181 -30.57238 -29.05470 -26.67472 -25.88882 -21.84331 -21.29311 -19.75044 -17.89864 -16.49406 -16.11431 -14.82736 -14.57209 -14.17278 -13.43771 -13.04314 -12.73845 -12.61081 -12.01615 -11.72027 -11.67413 -11.31192 -11.13111 -10.82327 -10.50864 -9.66422 -9.17814 -8.64740 -8.10097 -7.79177 -7.06011 -6.79275 -4.78425 1.96347 2.66411 2.94985 2.96653 2.99101 3.73539 4.03830 4.29620 4.89036 5.38755 5.44740 5.52414 5.60309 5.95746 5.96425 6.03527 6.18050 6.41383 6.70797 6.84835 6.89283 7.23830 7.50108 7.66821 7.78612 8.07501 8.49606 8.93715 9.13062 9.76910 10.09493 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.061102 B = 0.009589 C = 0.008325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.137633 B = 2919.387147 C = 3362.379812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.126 4.126 3 C 0.016 3.984 4 N -0.484 5.484 5 C 0.080 3.920 6 C 0.067 3.933 7 N -0.525 5.525 8 C 0.415 3.585 9 C -0.438 4.438 10 H 0.089 0.911 11 C 0.075 3.925 12 N -0.712 5.712 13 Si 0.923 3.077 14 H -0.263 1.263 15 H -0.274 1.274 16 H -0.263 1.263 17 N -0.645 5.645 18 H 0.403 0.597 19 C 0.025 3.975 20 H 0.059 0.941 21 H 0.051 0.949 22 H 0.062 0.938 23 H 0.136 0.864 24 H 0.144 0.856 25 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.667 0.021 -0.015 5.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.133 4.133 3 C -0.138 4.138 4 N -0.194 5.194 5 C -0.086 4.086 6 C -0.063 4.063 7 N -0.250 5.250 8 C 0.178 3.822 9 C -0.475 4.475 10 H 0.107 0.893 11 C -0.153 4.153 12 N -0.333 5.333 13 Si 0.746 3.254 14 H -0.188 1.188 15 H -0.199 1.199 16 H -0.188 1.188 17 N -0.261 5.261 18 H 0.239 0.761 19 C -0.092 4.092 20 H 0.078 0.922 21 H 0.070 0.930 22 H 0.081 0.919 23 H 0.153 0.847 24 H 0.161 0.839 25 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.126 0.612 -0.011 4.171 hybrid contribution -1.723 -1.619 -0.006 2.364 sum -5.849 -1.007 -0.017 5.935 Atomic orbital electron populations 1.20517 0.92241 1.01569 1.01159 1.19487 0.95242 0.91276 1.07256 1.21597 0.89787 0.95216 1.07240 1.67260 1.07595 1.30950 1.13549 1.21658 0.98768 0.84814 1.03337 1.20669 0.89985 0.95582 1.00105 1.71346 1.25853 0.95859 1.31950 1.20541 0.77692 0.93393 0.90585 1.18525 0.94449 0.87139 1.47415 0.89263 1.25891 0.94852 1.01101 0.93462 1.69943 0.98805 1.37560 1.27030 0.86137 0.78473 0.80852 0.79937 1.18792 1.19866 1.18787 1.43298 1.09283 1.03968 1.69529 0.76071 1.18812 0.96676 0.85325 1.08340 0.92234 0.93024 0.91925 0.84687 0.83862 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.49 10.05 36.00 0.36 -1.13 15 2 C -0.13 -2.56 5.90 -104.49 -0.62 -3.17 15 3 C 0.02 0.32 10.84 -17.42 -0.19 0.14 15 4 N -0.48 -10.84 10.32 -12.74 -0.13 -10.97 15 5 C 0.08 1.92 11.30 -16.91 -0.19 1.72 15 6 C 0.07 1.76 7.25 -84.91 -0.62 1.14 15 7 N -0.52 -14.80 9.33 -10.27 -0.10 -14.89 15 8 C 0.41 10.90 7.57 -155.53 -1.18 9.72 15 9 C -0.44 -10.86 9.47 -38.05 -0.36 -11.22 15 10 H 0.09 1.97 7.85 -52.49 -0.41 1.56 15 11 C 0.08 1.80 5.50 -17.29 -0.10 1.71 15 12 N -0.71 -18.41 11.85 55.57 0.66 -17.75 15 13 Si 0.92 17.33 29.56 -169.99 -5.03 12.31 15 14 H -0.26 -4.85 7.11 56.52 0.40 -4.45 15 15 H -0.27 -5.05 7.11 56.52 0.40 -4.65 15 16 H -0.26 -4.85 7.11 56.52 0.40 -4.45 15 17 N -0.65 -14.67 6.31 -9.85 -0.06 -14.73 15 18 H 0.40 7.62 8.96 -40.82 -0.37 7.25 15 19 C 0.03 0.60 7.06 -83.83 -0.59 0.00 15 20 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 21 H 0.05 0.76 8.10 -51.93 -0.42 0.34 15 22 H 0.06 0.82 8.10 -51.93 -0.42 0.40 15 23 H 0.14 2.27 8.06 -52.49 -0.42 1.85 15 24 H 0.14 3.18 8.06 -52.49 -0.42 2.76 15 25 H 0.28 6.57 8.29 -40.82 -0.34 6.23 15 LS Contribution 229.19 15.07 3.45 3.45 Total: -1.00 -29.73 229.19 -6.70 -36.43 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -2.02 Total: 7.25 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -3.47 Total: -1.09 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.37 Total: -58.35 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.31 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -29.73 -6.70 -36.43 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238543873.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.591 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds