Wall clock time and date at job start Mon Mar 30 2020 02:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 N 1.12392 * 1 3 3 N 1.12402 * 179.97438 * 2 1 4 4 C 1.32508 * 119.99768 * 180.86670 * 3 2 1 5 5 C 1.41842 * 120.33732 * 0.02562 * 4 3 2 6 6 C 1.36340 * 119.63591 * 180.02562 * 5 4 3 7 7 C 1.38949 * 120.35303 * 0.02562 * 6 5 4 8 8 C 1.38907 * 120.69534 * 0.02562 * 7 6 5 9 9 C 1.36375 * 120.35147 * 359.66364 * 8 7 6 10 10 C 1.50704 * 120.17944 * 180.30174 * 9 8 7 11 11 C 1.50695 * 109.47326 * 265.32946 * 10 9 8 12 12 H 1.08000 * 120.00108 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00227 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00206 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00117 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47272 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47044 * 120.00042 * 15 13 11 18 18 H 1.48498 * 109.47148 * 239.99536 * 15 13 11 19 19 H 1.07999 * 120.17950 * 359.97438 * 5 4 3 20 20 H 1.08003 * 119.82090 * 179.97438 * 6 5 4 21 21 H 1.07991 * 119.64935 * 179.97438 * 7 6 5 22 22 H 1.08003 * 119.81904 * 179.97438 * 8 7 6 23 23 H 1.09002 * 109.47058 * 25.33001 * 10 9 8 24 24 H 1.09004 * 109.46750 * 145.32791 * 10 9 8 25 25 H 0.96993 * 120.00498 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 7 1.1239 0.0000 0.0000 3 7 2.2479 0.0005 0.0000 4 6 2.9099 1.1482 0.0174 5 6 2.2074 2.3803 0.0365 6 6 2.9029 3.5528 0.0537 7 6 4.2924 3.5451 0.0520 8 6 4.9947 2.3468 0.0322 9 6 4.3279 1.1573 0.0211 10 6 5.0939 -0.1405 0.0066 11 6 5.2473 -0.6174 -1.4147 12 1 4.8313 -0.0389 -2.2263 13 6 5.9177 -1.7928 -1.6789 14 7 6.4238 -2.4977 -0.6906 15 14 6.1072 -2.3843 -3.4406 16 1 5.4528 -1.4191 -4.3600 17 1 7.5503 -2.4874 -3.7757 18 1 5.4688 -3.7171 -3.5867 19 1 1.1274 2.3895 0.0367 20 1 2.3710 4.4927 0.0680 21 1 4.8318 4.4805 0.0653 22 1 6.0747 2.3573 0.0307 23 1 6.0792 0.0142 0.4462 24 1 4.5516 -0.8889 0.5845 25 1 6.8958 -3.3244 -0.8765 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238546411.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:08 Heat of formation + Delta-G solvation = 136.479463 kcal Electronic energy + Delta-G solvation = -12134.164474 eV Core-core repulsion = 9922.901223 eV Total energy + Delta-G solvation = -2211.263250 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.07489 -38.77687 -36.21384 -33.52230 -31.43152 -30.08944 -27.22930 -24.08527 -23.23076 -20.80385 -19.08791 -17.91364 -17.53295 -16.28940 -15.89750 -15.37817 -14.50348 -14.39323 -13.67370 -12.84363 -12.71401 -12.02911 -11.62179 -11.28658 -10.98729 -10.64801 -10.46411 -10.15959 -10.05872 -9.53368 -9.38379 -8.39999 -8.36296 -7.26596 -6.01653 -4.04215 1.11284 1.66177 1.89956 3.03663 3.26605 3.30649 3.38413 3.42835 4.28689 4.49520 5.04475 5.12483 5.33914 5.45535 5.68858 5.87683 5.98986 6.44698 6.48415 6.72081 6.89053 7.01392 7.39957 7.56835 7.77288 7.93427 8.32185 8.98918 9.58321 9.84434 11.08459 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.030535 B = 0.011054 C = 0.009120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.766630 B = 2532.454288 C = 3069.526248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 N 0.275 4.725 3 N -0.277 5.277 4 C 0.086 3.914 5 C -0.179 4.179 6 C -0.118 4.118 7 C -0.125 4.125 8 C -0.106 4.106 9 C 0.000 4.000 10 C 0.051 3.949 11 C -0.502 4.502 12 H 0.055 0.945 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.284 1.284 19 H 0.110 0.890 20 H 0.118 0.882 21 H 0.119 0.881 22 H 0.131 0.869 23 H 0.032 0.968 24 H 0.041 0.959 25 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.345 9.252 1.760 10.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 N 0.280 4.720 3 N -0.175 5.175 4 C -0.017 4.017 5 C -0.204 4.204 6 C -0.137 4.137 7 C -0.145 4.145 8 C -0.124 4.124 9 C -0.006 4.006 10 C 0.014 3.986 11 C -0.540 4.540 12 H 0.073 0.927 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.210 1.210 19 H 0.128 0.872 20 H 0.136 0.864 21 H 0.137 0.863 22 H 0.149 0.851 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.774 8.442 1.786 10.383 hybrid contribution 0.120 0.059 -1.022 1.031 sum -5.654 8.501 0.764 10.238 Atomic orbital electron populations 1.87497 0.88872 1.00195 1.41127 1.41420 1.01570 1.15892 1.13123 1.65196 0.87502 1.24588 1.40218 1.18449 0.93961 0.83819 1.05424 1.21489 0.98713 0.92969 1.07247 1.20380 0.94339 0.96831 1.02125 1.21420 0.93863 0.98040 1.01221 1.20818 1.00455 0.91147 1.00024 1.20576 0.89473 0.98554 0.91965 1.18346 0.94336 0.87686 0.98232 1.20970 1.34964 1.06671 0.91413 0.92655 1.24953 0.95635 0.96514 0.97071 1.69954 1.37174 1.15310 1.30861 0.86526 0.77759 0.78738 0.84965 1.19783 1.20936 1.20988 0.87187 0.86446 0.86336 0.85109 0.94998 0.94046 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.19 -3.05 20.42 60.35 1.23 -1.82 15 2 N 0.27 4.94 9.06 60.35 0.55 5.49 15 3 N -0.28 -5.65 10.13 32.29 0.33 -5.32 15 4 C 0.09 1.70 6.64 -84.83 -0.56 1.14 15 5 C -0.18 -2.98 9.44 -38.89 -0.37 -3.35 15 6 C -0.12 -1.73 9.98 -40.00 -0.40 -2.13 15 7 C -0.13 -1.86 10.06 -39.07 -0.39 -2.25 15 8 C -0.11 -1.88 9.60 -40.01 -0.38 -2.26 15 9 C 0.00 -0.01 5.13 -103.93 -0.53 -0.54 15 10 C 0.05 1.28 4.83 -29.04 -0.14 1.14 15 11 C -0.50 -13.83 9.09 -34.44 -0.31 -14.14 15 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 15 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 14 N -0.89 -26.21 13.29 55.43 0.74 -25.47 15 15 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 15 16 H -0.27 -6.53 7.11 56.52 0.40 -6.12 15 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 19 H 0.11 1.65 7.36 -52.49 -0.39 1.26 15 20 H 0.12 1.35 8.06 -52.48 -0.42 0.93 15 21 H 0.12 1.38 8.06 -52.49 -0.42 0.96 15 22 H 0.13 2.17 8.06 -52.48 -0.42 1.74 15 23 H 0.03 0.82 8.05 -51.93 -0.42 0.40 15 24 H 0.04 1.12 7.71 -51.93 -0.40 0.72 15 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 15 LS Contribution 237.33 15.07 3.58 3.58 Total: -1.00 -28.88 237.33 -3.81 -32.69 By element: Atomic # 1 Polarization: -2.85 SS G_CDS: -2.01 Total: -4.86 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -3.19 Total: -20.83 kcal Atomic # 7 Polarization: -29.97 SS G_CDS: 2.84 Total: -27.12 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -28.88 -3.81 -32.69 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238546411.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.171 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds