Wall clock time and date at job start Mon Mar 30 2020 02:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 N 1.12392 * 1 3 3 N 1.12402 * 179.97438 * 2 1 4 4 C 1.32508 * 119.99768 * 180.86670 * 3 2 1 5 5 C 1.41842 * 120.33732 * 0.02562 * 4 3 2 6 6 C 1.36340 * 119.63591 * 180.02562 * 5 4 3 7 7 C 1.38949 * 120.35303 * 0.02562 * 6 5 4 8 8 C 1.38907 * 120.69534 * 0.02562 * 7 6 5 9 9 C 1.36375 * 120.35147 * 359.66364 * 8 7 6 10 10 C 1.50704 * 120.17944 * 180.30174 * 9 8 7 11 11 C 1.50695 * 109.47326 * 265.32946 * 10 9 8 12 12 H 1.08000 * 120.00108 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00227 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00206 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00117 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47272 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47044 * 120.00042 * 15 13 11 18 18 H 1.48498 * 109.47148 * 239.99536 * 15 13 11 19 19 H 1.07999 * 120.17950 * 359.97438 * 5 4 3 20 20 H 1.08003 * 119.82090 * 179.97438 * 6 5 4 21 21 H 1.07991 * 119.64935 * 179.97438 * 7 6 5 22 22 H 1.08003 * 119.81904 * 179.97438 * 8 7 6 23 23 H 1.09002 * 109.47058 * 25.33001 * 10 9 8 24 24 H 1.09004 * 109.46750 * 145.32791 * 10 9 8 25 25 H 0.96993 * 120.00498 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 7 1.1239 0.0000 0.0000 3 7 2.2479 0.0005 0.0000 4 6 2.9099 1.1482 0.0174 5 6 2.2074 2.3803 0.0365 6 6 2.9029 3.5528 0.0537 7 6 4.2924 3.5451 0.0520 8 6 4.9947 2.3468 0.0322 9 6 4.3279 1.1573 0.0211 10 6 5.0939 -0.1405 0.0066 11 6 5.2473 -0.6174 -1.4147 12 1 4.8313 -0.0389 -2.2263 13 6 5.9177 -1.7928 -1.6789 14 7 6.4238 -2.4977 -0.6906 15 14 6.1072 -2.3843 -3.4406 16 1 5.4528 -1.4191 -4.3600 17 1 7.5503 -2.4874 -3.7757 18 1 5.4688 -3.7171 -3.5867 19 1 1.1274 2.3895 0.0367 20 1 2.3710 4.4927 0.0680 21 1 4.8318 4.4805 0.0653 22 1 6.0747 2.3573 0.0307 23 1 6.0792 0.0142 0.4462 24 1 4.5516 -0.8889 0.5845 25 1 6.8958 -3.3244 -0.8765 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238546411.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:08 Heat of formation + Delta-G solvation = 117.916128 kcal Electronic energy + Delta-G solvation = -12134.969440 eV Core-core repulsion = 9922.901223 eV Total energy + Delta-G solvation = -2212.068217 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.49277 -40.14992 -37.60620 -35.44960 -33.16316 -31.41311 -29.04731 -25.64444 -24.88940 -22.33868 -20.43899 -19.34406 -18.94723 -18.42181 -17.29485 -16.86959 -16.20730 -15.85488 -14.99883 -14.58644 -14.26378 -13.66146 -13.36165 -13.02425 -12.68086 -12.44013 -12.12309 -11.80529 -11.52174 -11.48684 -10.97095 -10.55233 -9.79123 -8.68304 -8.13905 -6.25403 -0.22131 0.27708 0.56085 1.39102 1.40363 1.52416 1.66934 1.84398 2.41952 2.97337 3.16587 3.76258 3.89544 4.29079 4.44184 4.49898 4.62235 5.06366 5.17899 5.35354 5.42846 5.49168 5.60029 5.79843 5.94757 6.08426 6.25692 6.85610 7.41020 8.43444 8.94788 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.030535 B = 0.011054 C = 0.009120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.766630 B = 2532.454288 C = 3069.526248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.159 5.159 2 N 0.275 4.725 3 N -0.314 5.314 4 C 0.067 3.933 5 C -0.181 4.181 6 C -0.103 4.103 7 C -0.112 4.112 8 C -0.112 4.112 9 C -0.040 4.040 10 C 0.063 3.937 11 C -0.511 4.511 12 H 0.050 0.950 13 C 0.006 3.994 14 N -0.930 5.930 15 Si 0.957 3.043 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.281 1.281 19 H 0.127 0.873 20 H 0.162 0.838 21 H 0.161 0.839 22 H 0.134 0.866 23 H 0.011 0.989 24 H 0.009 0.991 25 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.344 11.511 0.909 13.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 N 0.280 4.720 3 N -0.213 5.213 4 C -0.035 4.035 5 C -0.205 4.205 6 C -0.121 4.121 7 C -0.131 4.131 8 C -0.131 4.131 9 C -0.045 4.045 10 C 0.026 3.974 11 C -0.549 4.549 12 H 0.068 0.932 13 C -0.192 4.192 14 N -0.571 5.571 15 Si 0.782 3.218 16 H -0.191 1.191 17 H -0.199 1.199 18 H -0.207 1.207 19 H 0.145 0.855 20 H 0.180 0.820 21 H 0.179 0.821 22 H 0.152 0.848 23 H 0.029 0.971 24 H 0.027 0.973 25 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.772 10.718 0.934 12.712 hybrid contribution 0.313 -0.556 -0.704 0.950 sum -6.459 10.162 0.230 12.043 Atomic orbital electron populations 1.87457 0.88160 0.99689 1.39446 1.41342 1.01412 1.16219 1.13014 1.65190 0.88319 1.25748 1.42030 1.18598 0.93613 0.84918 1.06388 1.21734 0.99603 0.92360 1.06810 1.20933 0.94403 0.97770 0.99016 1.21822 0.94263 0.98228 0.98831 1.20960 1.00902 0.91371 0.99849 1.20261 0.90286 0.97632 0.96361 1.17992 0.93441 0.89576 0.96438 1.21268 1.34341 1.06721 0.92557 0.93210 1.25806 0.95435 0.96771 1.01196 1.70073 1.38171 1.15845 1.33026 0.85515 0.78116 0.78099 0.80045 1.19148 1.19893 1.20739 0.85545 0.82013 0.82132 0.84826 0.97064 0.97296 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.16 -4.92 20.42 37.02 0.76 -4.17 15 2 N 0.27 9.78 9.06 37.02 0.34 10.11 15 3 N -0.31 -13.05 10.13 -51.74 -0.52 -13.58 15 4 C 0.07 2.65 6.64 40.82 0.27 2.92 15 5 C -0.18 -5.55 9.44 22.72 0.21 -5.33 15 6 C -0.10 -2.56 9.98 22.00 0.22 -2.34 15 7 C -0.11 -2.89 10.06 22.60 0.23 -2.66 15 8 C -0.11 -3.89 9.60 22.00 0.21 -3.68 15 9 C -0.04 -1.72 5.13 -19.42 -0.10 -1.82 15 10 C 0.06 3.31 4.83 29.10 0.14 3.45 15 11 C -0.51 -29.07 9.09 25.60 0.23 -28.83 15 12 H 0.05 2.81 7.74 -2.91 -0.02 2.79 15 13 C 0.01 0.32 5.46 84.65 0.46 0.78 15 14 N -0.93 -56.35 13.29 21.45 0.28 -56.07 15 15 Si 0.96 44.83 29.54 68.60 2.03 46.85 15 16 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 17 H -0.27 -12.29 7.11 99.48 0.71 -11.59 15 18 H -0.28 -12.99 7.11 99.48 0.71 -12.28 15 19 H 0.13 3.40 7.36 -2.91 -0.02 3.38 15 20 H 0.16 2.65 8.06 -2.91 -0.02 2.63 15 21 H 0.16 2.84 8.06 -2.92 -0.02 2.81 15 22 H 0.13 4.40 8.06 -2.91 -0.02 4.38 15 23 H 0.01 0.61 8.05 -2.39 -0.02 0.59 15 24 H 0.01 0.51 7.71 -2.38 -0.02 0.49 15 25 H 0.26 14.98 8.31 -92.71 -0.77 14.21 15 Total: -1.00 -64.32 237.33 5.96 -58.37 By element: Atomic # 1 Polarization: -5.22 SS G_CDS: 1.20 Total: -4.02 kcal Atomic # 6 Polarization: -39.38 SS G_CDS: 1.88 Total: -37.50 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: 0.85 Total: -63.70 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -64.32 5.96 -58.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238546411.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.285 kcal (2) G-P(sol) polarization free energy of solvation -64.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds