Wall clock time and date at job start Mon Mar 30 2020 02:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86803 * 119.99982 * 2 1 4 4 H 1.48500 * 109.47314 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47414 * 299.99956 * 3 2 1 6 6 H 1.48504 * 109.47271 * 59.99978 * 3 2 1 7 7 C 1.40036 * 120.00422 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00723 * 180.02562 * 7 2 1 9 9 C 1.41407 * 119.99648 * 359.97438 * 7 2 1 10 10 N 1.33464 * 119.70694 * 0.02562 * 9 7 2 11 11 C 1.31400 * 121.41080 * 179.97438 * 10 9 7 12 12 C 1.38654 * 120.84827 * 0.08183 * 11 10 9 13 13 C 1.39363 * 119.75168 * 359.83946 * 12 11 10 14 14 C 1.37392 * 118.58643 * 359.91884 * 13 12 11 15 15 C 1.50443 * 122.62522 * 180.64985 * 14 13 12 16 16 C 1.52803 * 110.48272 * 342.12145 * 15 14 13 17 17 C 1.53312 * 108.47919 * 51.03625 * 16 15 14 18 18 C 1.50369 * 118.61691 * 179.72750 * 13 12 11 19 19 H 0.97005 * 119.99768 * 0.02562 * 1 2 3 20 20 H 1.08001 * 119.57292 * 180.02562 * 11 10 9 21 21 H 1.08005 * 120.12518 * 179.86616 * 12 11 10 22 22 H 1.09000 * 109.30237 * 221.81139 * 15 14 13 23 23 H 1.08997 * 109.13362 * 102.32721 * 15 14 13 24 24 H 1.09000 * 109.63851 * 291.33674 * 16 15 14 25 25 H 1.09003 * 109.63504 * 170.73427 * 16 15 14 26 26 H 1.08995 * 109.63945 * 170.65647 * 17 16 15 27 27 H 1.08998 * 109.80842 * 50.13981 * 17 16 15 28 28 H 1.08997 * 109.30520 * 282.82720 * 18 13 12 29 29 H 1.09004 * 109.29712 * 42.20008 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 0.0006 5 1 1.8827 2.3965 -1.2124 6 1 1.8826 2.3965 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2128 0.0010 9 6 1.3006 -2.4373 0.0016 10 7 -0.0340 -2.4305 0.0016 11 6 -0.7246 -3.5484 0.0021 12 6 -0.0854 -4.7789 0.0044 13 6 1.3071 -4.8349 0.0028 14 6 2.0124 -3.6559 -0.0028 15 6 3.5161 -3.6103 -0.0193 16 6 4.0966 -4.9566 0.4111 17 6 3.4340 -6.0602 -0.4217 18 6 1.9737 -6.1827 0.0115 19 1 -0.4850 0.8401 -0.0004 20 1 -1.8038 -3.5083 0.0017 21 1 -0.6646 -5.6905 0.0070 22 1 3.8606 -2.8343 0.6642 23 1 3.8554 -3.3778 -1.0287 24 1 3.8914 -5.1227 1.4687 25 1 5.1728 -4.9636 0.2384 26 1 3.9474 -7.0063 -0.2509 27 1 3.4817 -5.8033 -1.4799 28 1 1.9301 -6.5997 1.0177 29 1 1.4492 -6.8485 -0.6740 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238553886.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:10 Heat of formation + Delta-G solvation = 8.206934 kcal Electronic energy + Delta-G solvation = -12857.931532 eV Core-core repulsion = 10744.646311 eV Total energy + Delta-G solvation = -2113.285221 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.88404 -35.65888 -33.61242 -31.32407 -29.77807 -28.25813 -25.56736 -22.95184 -21.97397 -20.74408 -18.70261 -16.94224 -15.78865 -14.63444 -14.48652 -14.10397 -13.32670 -13.13741 -12.89615 -12.49500 -12.17044 -11.44619 -11.33569 -11.32037 -11.01477 -10.90213 -10.48276 -10.28804 -10.25152 -9.92168 -9.34853 -9.29794 -7.80272 -7.45350 -7.39684 -6.34966 -4.46933 2.78168 3.02658 3.10376 3.14407 3.22322 3.96513 4.78585 5.42259 5.46135 5.46704 5.84064 6.03415 6.10024 6.18691 6.22673 6.28722 6.37417 6.41141 6.59269 6.67319 6.78437 6.83354 6.97232 7.04671 7.21638 7.49480 7.68559 7.91472 8.10063 8.28920 8.71924 9.00106 10.19173 10.36786 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.040479 B = 0.011944 C = 0.009372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.544447 B = 2343.750249 C = 2986.852871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.069 3.931 3 Si 0.904 3.096 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.432 4.432 8 H 0.087 0.913 9 C 0.258 3.742 10 N -0.489 5.489 11 C 0.119 3.881 12 C -0.321 4.321 13 C -0.023 4.023 14 C -0.231 4.231 15 C -0.049 4.049 16 C -0.117 4.117 17 C -0.114 4.114 18 C -0.073 4.073 19 H 0.271 0.729 20 H 0.115 0.885 21 H 0.090 0.910 22 H 0.064 0.936 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.653 -4.767 0.020 6.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.156 4.156 3 Si 0.728 3.272 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.463 4.463 8 H 0.105 0.895 9 C 0.132 3.868 10 N -0.202 5.202 11 C -0.045 4.045 12 C -0.344 4.344 13 C -0.029 4.029 14 C -0.236 4.236 15 C -0.087 4.087 16 C -0.154 4.154 17 C -0.152 4.152 18 C -0.110 4.110 19 H 0.082 0.918 20 H 0.133 0.867 21 H 0.108 0.892 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.044 -3.796 0.019 5.546 hybrid contribution 0.565 -0.141 -0.002 0.582 sum 4.608 -3.937 0.018 6.061 Atomic orbital electron populations 1.70165 1.07201 1.27488 1.28856 1.26093 0.94860 1.01046 0.93635 0.86329 0.80894 0.81409 0.78540 1.18373 1.19861 1.19867 1.19720 0.94397 0.89307 1.42898 0.89508 1.18640 0.88286 0.91407 0.88486 1.68711 1.07212 1.26558 1.17674 1.22438 0.98585 0.88998 0.94484 1.21255 0.93994 0.97699 1.21499 1.19154 0.93297 0.93137 0.97278 1.20085 0.94653 0.93435 1.15425 1.19998 0.92878 0.95586 1.00200 1.21556 0.98291 0.96067 0.99529 1.21495 0.95649 0.97954 1.00082 1.20311 0.94952 0.95230 1.00488 0.91795 0.86719 0.89160 0.91771 0.92925 0.92442 0.92871 0.92891 0.92142 0.92010 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.46 11.46 55.55 0.64 -18.82 15 2 C 0.07 1.78 5.50 -17.34 -0.10 1.68 15 3 Si 0.90 18.77 29.56 -169.99 -5.02 13.74 15 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 15 5 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 7 C -0.43 -11.62 8.62 -37.70 -0.32 -11.94 15 8 H 0.09 2.17 6.11 -52.49 -0.32 1.85 15 9 C 0.26 7.16 6.56 -84.86 -0.56 6.60 15 10 N -0.49 -13.93 7.85 -11.06 -0.09 -14.02 15 11 C 0.12 3.02 11.18 -17.58 -0.20 2.82 15 12 C -0.32 -7.49 9.75 -39.01 -0.38 -7.87 15 13 C -0.02 -0.52 5.74 -104.67 -0.60 -1.12 15 14 C -0.23 -5.68 5.79 -103.96 -0.60 -6.28 15 15 C -0.05 -1.01 4.82 -28.11 -0.14 -1.15 15 16 C -0.12 -1.98 5.97 -26.67 -0.16 -2.14 15 17 C -0.11 -1.84 5.97 -26.66 -0.16 -2.00 15 18 C -0.07 -1.31 5.72 -28.14 -0.16 -1.47 15 19 H 0.27 6.65 8.29 -40.82 -0.34 6.31 15 20 H 0.12 2.59 8.06 -52.49 -0.42 2.17 15 21 H 0.09 1.86 8.06 -52.48 -0.42 1.44 15 22 H 0.06 1.34 6.83 -51.93 -0.35 0.98 15 23 H 0.05 1.07 8.14 -51.93 -0.42 0.64 15 24 H 0.06 0.97 8.10 -51.93 -0.42 0.55 15 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 27 H 0.06 0.99 8.11 -51.93 -0.42 0.57 15 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 LS Contribution 240.07 15.07 3.62 3.62 Total: -1.00 -29.38 240.07 -7.84 -37.22 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -3.61 Total: 1.13 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -3.37 Total: -22.87 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.55 Total: -32.84 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.38 -7.84 -37.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238553886.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.428 kcal (2) G-P(sol) polarization free energy of solvation -29.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds