Wall clock time and date at job start Mon Mar 30 2020 02:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86803 * 119.99982 * 2 1 4 4 H 1.48500 * 109.47314 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47414 * 299.99956 * 3 2 1 6 6 H 1.48504 * 109.47271 * 59.99978 * 3 2 1 7 7 C 1.40036 * 120.00422 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00723 * 180.02562 * 7 2 1 9 9 C 1.41407 * 119.99648 * 359.97438 * 7 2 1 10 10 N 1.33464 * 119.70694 * 0.02562 * 9 7 2 11 11 C 1.31400 * 121.41080 * 179.97438 * 10 9 7 12 12 C 1.38654 * 120.84827 * 0.08183 * 11 10 9 13 13 C 1.39363 * 119.75168 * 359.83946 * 12 11 10 14 14 C 1.37392 * 118.58643 * 359.91884 * 13 12 11 15 15 C 1.50443 * 122.62522 * 180.64985 * 14 13 12 16 16 C 1.52803 * 110.48272 * 342.12145 * 15 14 13 17 17 C 1.53312 * 108.47919 * 51.03625 * 16 15 14 18 18 C 1.50369 * 118.61691 * 179.72750 * 13 12 11 19 19 H 0.97005 * 119.99768 * 0.02562 * 1 2 3 20 20 H 1.08001 * 119.57292 * 180.02562 * 11 10 9 21 21 H 1.08005 * 120.12518 * 179.86616 * 12 11 10 22 22 H 1.09000 * 109.30237 * 221.81139 * 15 14 13 23 23 H 1.08997 * 109.13362 * 102.32721 * 15 14 13 24 24 H 1.09000 * 109.63851 * 291.33674 * 16 15 14 25 25 H 1.09003 * 109.63504 * 170.73427 * 16 15 14 26 26 H 1.08995 * 109.63945 * 170.65647 * 17 16 15 27 27 H 1.08998 * 109.80842 * 50.13981 * 17 16 15 28 28 H 1.08997 * 109.30520 * 282.82720 * 18 13 12 29 29 H 1.09004 * 109.29712 * 42.20008 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 0.0006 5 1 1.8827 2.3965 -1.2124 6 1 1.8826 2.3965 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2128 0.0010 9 6 1.3006 -2.4373 0.0016 10 7 -0.0340 -2.4305 0.0016 11 6 -0.7246 -3.5484 0.0021 12 6 -0.0854 -4.7789 0.0044 13 6 1.3071 -4.8349 0.0028 14 6 2.0124 -3.6559 -0.0028 15 6 3.5161 -3.6103 -0.0193 16 6 4.0966 -4.9566 0.4111 17 6 3.4340 -6.0602 -0.4217 18 6 1.9737 -6.1827 0.0115 19 1 -0.4850 0.8401 -0.0004 20 1 -1.8038 -3.5083 0.0017 21 1 -0.6646 -5.6905 0.0070 22 1 3.8606 -2.8343 0.6642 23 1 3.8554 -3.3778 -1.0287 24 1 3.8914 -5.1227 1.4687 25 1 5.1728 -4.9636 0.2384 26 1 3.9474 -7.0063 -0.2509 27 1 3.4817 -5.8033 -1.4799 28 1 1.9301 -6.5997 1.0177 29 1 1.4492 -6.8485 -0.6740 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238553886.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:10 Heat of formation + Delta-G solvation = -8.370915 kcal Electronic energy + Delta-G solvation = -12858.650401 eV Core-core repulsion = 10744.646311 eV Total energy + Delta-G solvation = -2114.004091 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.66934 -37.29089 -35.51086 -33.08948 -31.49466 -29.95942 -27.50273 -24.54902 -23.60787 -22.59176 -20.31182 -18.82185 -17.60373 -16.38683 -16.04586 -15.88863 -15.02102 -14.58180 -14.50426 -14.24311 -13.88426 -13.14473 -12.99537 -12.97283 -12.71037 -12.56738 -12.22093 -11.87549 -11.66206 -11.42336 -11.17744 -10.97255 -9.65584 -9.38794 -9.33446 -8.25955 -6.47125 0.90964 1.18098 1.39318 1.52476 1.55029 2.22436 2.86146 3.92444 4.00712 4.07121 4.14351 4.36660 4.49336 4.63582 4.77445 4.81256 4.84641 4.97645 5.07949 5.15627 5.19844 5.24151 5.32413 5.36321 5.55055 5.67001 5.83693 6.08833 6.20523 6.35081 6.79022 7.03737 8.25142 8.48197 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.040479 B = 0.011944 C = 0.009372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.544447 B = 2343.750249 C = 2986.852871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.020 3.980 3 Si 0.985 3.015 4 H -0.250 1.250 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.465 4.465 8 H 0.095 0.905 9 C 0.219 3.781 10 N -0.531 5.531 11 C 0.091 3.909 12 C -0.318 4.318 13 C -0.032 4.032 14 C -0.248 4.248 15 C -0.048 4.048 16 C -0.111 4.111 17 C -0.110 4.110 18 C -0.072 4.072 19 H 0.276 0.724 20 H 0.130 0.870 21 H 0.120 0.880 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.356 -6.086 0.041 8.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.201 4.201 3 Si 0.805 3.195 4 H -0.174 1.174 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.496 4.496 8 H 0.113 0.887 9 C 0.093 3.907 10 N -0.244 5.244 11 C -0.071 4.071 12 C -0.341 4.341 13 C -0.038 4.038 14 C -0.252 4.252 15 C -0.086 4.086 16 C -0.148 4.148 17 C -0.148 4.148 18 C -0.109 4.109 19 H 0.087 0.913 20 H 0.147 0.853 21 H 0.138 0.862 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.740 -5.149 0.040 7.711 hybrid contribution -0.033 0.140 -0.009 0.144 sum 5.707 -5.010 0.031 7.594 Atomic orbital electron populations 1.70282 1.09057 1.28781 1.30251 1.27071 0.95686 1.04753 0.92542 0.85119 0.79596 0.76043 0.78712 1.17358 1.19209 1.19212 1.20079 0.94956 0.90172 1.44417 0.88744 1.19200 0.88692 0.93312 0.89506 1.68629 1.08176 1.28344 1.19281 1.22843 0.99522 0.89523 0.95242 1.21644 0.94903 0.97977 1.19566 1.19771 0.93387 0.95164 0.95474 1.20550 0.96830 0.93100 1.14724 1.20012 0.90602 0.97990 0.99980 1.21538 0.99953 0.93817 0.99539 1.21509 0.94440 0.99380 0.99432 1.20406 0.96120 0.92309 1.02028 0.91322 0.85277 0.86190 0.92847 0.93084 0.92479 0.89855 0.89027 0.92667 0.90406 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -42.97 11.46 21.84 0.25 -42.72 15 2 C 0.02 1.07 5.50 85.29 0.47 1.54 15 3 Si 0.99 39.14 29.56 68.60 2.03 41.17 15 4 H -0.25 -9.41 7.11 99.48 0.71 -8.71 15 5 H -0.27 -10.24 7.11 99.48 0.71 -9.54 15 6 H -0.27 -10.24 7.11 99.48 0.71 -9.54 15 7 C -0.46 -25.80 8.62 23.49 0.20 -25.59 15 8 H 0.09 4.85 6.11 -2.91 -0.02 4.83 15 9 C 0.22 12.57 6.56 40.38 0.26 12.84 15 10 N -0.53 -31.40 7.85 -188.91 -1.48 -32.88 15 11 C 0.09 4.70 11.18 84.86 0.95 5.65 15 12 C -0.32 -14.56 9.75 22.64 0.22 -14.34 15 13 C -0.03 -1.42 5.74 -19.90 -0.11 -1.53 15 14 C -0.25 -12.20 5.79 -19.44 -0.11 -12.31 15 15 C -0.05 -1.95 4.82 29.70 0.14 -1.81 15 16 C -0.11 -3.40 5.97 30.63 0.18 -3.22 15 17 C -0.11 -3.10 5.97 30.64 0.18 -2.92 15 18 C -0.07 -2.33 5.72 29.68 0.17 -2.16 15 19 H 0.28 14.07 8.29 -92.70 -0.77 13.30 15 20 H 0.13 5.99 8.06 -2.91 -0.02 5.97 15 21 H 0.12 4.67 8.06 -2.91 -0.02 4.65 15 22 H 0.05 2.23 6.83 -2.39 -0.02 2.21 15 23 H 0.05 2.04 8.14 -2.39 -0.02 2.02 15 24 H 0.06 1.76 8.10 -2.39 -0.02 1.74 15 25 H 0.08 2.07 8.14 -2.39 -0.02 2.05 15 26 H 0.09 1.94 8.14 -2.39 -0.02 1.92 15 27 H 0.05 1.62 8.11 -2.39 -0.02 1.60 15 28 H 0.08 2.32 8.14 -2.39 -0.02 2.30 15 29 H 0.08 2.28 8.14 -2.38 -0.02 2.26 15 Total: -1.00 -65.69 240.07 4.49 -61.20 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 1.14 Total: 17.08 kcal Atomic # 6 Polarization: -46.41 SS G_CDS: 2.56 Total: -43.85 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -1.23 Total: -75.60 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -65.69 4.49 -61.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238553886.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.829 kcal (2) G-P(sol) polarization free energy of solvation -65.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds