Wall clock time and date at job start Mon Mar 30 2020 02:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00233 * 2 1 4 4 H 1.48504 * 109.47069 * 269.99365 * 3 2 1 5 5 H 1.48497 * 109.47337 * 29.99486 * 3 2 1 6 6 H 1.48502 * 109.47298 * 149.99537 * 3 2 1 7 7 C 1.38816 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00000 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00139 * 180.02562 * 7 2 1 10 10 C 1.46507 * 119.99711 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.46955 * 324.99786 * 10 9 7 12 12 C 1.52996 * 109.47258 * 85.00171 * 10 9 7 13 13 C 1.52997 * 109.47131 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46991 * 299.99311 * 13 12 10 15 15 C 1.53006 * 109.46626 * 60.00378 * 14 13 12 16 16 C 1.52997 * 109.47127 * 299.99539 * 15 14 13 17 17 H 1.09002 * 109.47153 * 180.02562 * 16 15 14 18 18 Cl 1.80300 * 109.47276 * 300.00394 * 16 15 14 19 19 H 0.97001 * 119.99620 * 0.02562 * 1 2 3 20 20 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 21 21 H 1.09001 * 109.46993 * 300.00050 * 12 10 9 22 22 H 1.09000 * 109.47380 * 59.99156 * 12 10 9 23 23 H 1.09002 * 109.47153 * 179.97438 * 13 12 10 24 24 H 1.08993 * 109.47194 * 60.00154 * 13 12 10 25 25 H 1.08993 * 109.47839 * 300.00447 * 14 13 12 26 26 H 1.09000 * 109.47160 * 180.02562 * 14 13 12 27 27 H 1.09001 * 109.46801 * 59.99811 * 15 14 13 28 28 H 1.09001 * 109.46998 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 1 3.5644 -3.2066 0.5902 12 6 4.2588 -2.9752 -1.4360 13 6 5.0242 -4.3000 -1.4360 14 6 6.4112 -4.0875 -0.8261 15 6 6.2645 -3.5833 0.6110 16 6 5.4991 -2.2585 0.6111 17 1 5.3949 -1.8991 1.6348 18 17 6.4042 -1.0413 -0.3636 19 1 -0.4850 0.8401 -0.0004 20 1 3.8647 -0.3622 0.0014 21 1 3.2707 -3.1261 -1.8707 22 1 4.8063 -2.2396 -2.0251 23 1 5.1283 -4.6594 -2.4597 24 1 4.4770 -5.0358 -0.8469 25 1 6.9585 -3.3517 -1.4152 26 1 6.9568 -5.0312 -0.8265 27 1 5.7173 -4.3192 1.2002 28 1 7.2526 -3.4323 1.0457 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238556450.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:46 Heat of formation + Delta-G solvation = -19.637356 kcal Electronic energy + Delta-G solvation = -11738.911658 eV Core-core repulsion = 9621.986168 eV Total energy + Delta-G solvation = -2116.925490 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 203.077 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.39845 -35.07440 -34.15061 -31.38597 -30.27856 -28.32470 -23.48854 -22.23059 -20.96561 -19.46753 -17.57778 -15.59226 -14.70710 -14.46716 -14.15574 -13.59205 -13.10792 -12.66375 -12.34489 -12.21203 -11.43739 -11.28338 -11.05057 -10.88638 -10.60920 -10.50813 -10.24248 -10.00451 -9.74353 -9.65309 -9.49622 -8.89276 -7.26973 -5.76844 -3.12419 2.65678 3.40880 3.46454 3.48112 4.61276 4.79061 4.91719 5.04957 5.40200 5.44942 5.57113 5.59451 5.71256 5.77885 5.86641 5.96902 6.14070 6.21135 6.38891 6.42125 6.57241 6.82315 7.01291 7.98734 8.42053 9.21062 9.93615 10.13619 11.41255 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.045110 B = 0.012110 C = 0.010400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.551355 B = 2311.494771 C = 2691.585369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.007 3.993 3 Si 0.879 3.121 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.747 5.747 10 C 0.181 3.819 11 H 0.069 0.931 12 C -0.141 4.141 13 C -0.118 4.118 14 C -0.122 4.122 15 C -0.119 4.119 16 C -0.004 4.004 17 H 0.097 0.903 18 Cl -0.193 7.193 19 H 0.259 0.741 20 H 0.366 0.634 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.308 -7.059 0.048 15.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.189 4.189 3 Si 0.709 3.291 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.374 4.374 8 H 0.109 0.891 9 N -0.391 5.391 10 C 0.071 3.929 11 H 0.087 0.913 12 C -0.181 4.181 13 C -0.156 4.156 14 C -0.159 4.159 15 C -0.157 4.157 16 C -0.048 4.048 17 H 0.115 0.885 18 Cl -0.167 7.167 19 H 0.069 0.931 20 H 0.200 0.800 21 H 0.087 0.913 22 H 0.083 0.917 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.106 -7.009 -0.003 14.863 hybrid contribution 0.553 1.336 -0.061 1.447 sum 13.659 -5.673 -0.064 14.791 Atomic orbital electron populations 1.69700 1.05088 1.25847 1.57441 1.24637 0.95183 0.97161 1.01884 0.86617 0.79392 0.85056 0.78036 1.20962 1.21704 1.20049 1.19052 0.80467 0.94715 1.43192 0.89149 1.42844 1.04071 1.01953 1.90190 1.20396 0.88056 0.89918 0.94514 0.91301 1.22264 1.00471 0.95746 0.99603 1.21544 0.95490 0.98426 1.00150 1.21580 0.97899 1.00778 0.95642 1.21812 1.00267 0.95307 0.98353 1.24681 0.94087 0.89381 0.96661 0.88484 1.98674 1.78531 1.62797 1.76649 0.93053 0.79991 0.91343 0.91723 0.92536 0.92358 0.91238 0.92310 0.90275 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.41 13.97 55.49 0.78 -28.64 15 2 C 0.01 0.21 5.50 -17.43 -0.10 0.12 15 3 Si 0.88 22.66 27.74 -169.99 -4.71 17.94 15 4 H -0.28 -7.30 7.11 56.52 0.40 -6.90 15 5 H -0.29 -7.52 7.11 56.52 0.40 -7.12 15 6 H -0.27 -6.76 6.52 56.52 0.37 -6.39 15 7 C -0.24 -6.88 10.41 -15.06 -0.16 -7.04 15 8 H 0.09 2.69 8.06 -52.48 -0.42 2.27 15 9 N -0.75 -17.81 4.85 -53.42 -0.26 -18.07 15 10 C 0.18 3.42 2.48 -67.93 -0.17 3.25 15 11 H 0.07 1.32 8.08 -51.93 -0.42 0.90 15 12 C -0.14 -2.46 5.30 -26.73 -0.14 -2.60 15 13 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 15 14 C -0.12 -1.48 5.72 -26.73 -0.15 -1.63 15 15 C -0.12 -1.46 5.52 -26.73 -0.15 -1.61 15 16 C 0.00 -0.06 3.23 -26.73 -0.09 -0.14 15 17 H 0.10 1.51 8.14 -51.93 -0.42 1.09 15 18 Cl -0.19 -3.22 25.02 -51.86 -1.30 -4.52 15 19 H 0.26 7.81 8.31 -40.82 -0.34 7.47 15 20 H 0.37 8.82 4.78 -40.82 -0.20 8.62 15 21 H 0.07 1.33 8.14 -51.93 -0.42 0.90 15 22 H 0.06 1.18 7.06 -51.93 -0.37 0.82 15 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 25 H 0.07 0.90 7.06 -51.93 -0.37 0.54 15 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 15 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 LS Contribution 236.73 15.07 3.57 3.57 Total: -1.00 -30.42 236.73 -6.93 -37.36 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -3.90 Total: 3.77 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -1.11 Total: -11.41 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.52 Total: -46.71 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.71 Total: 17.94 kcal Atomic # 17 Polarization: -3.22 SS G_CDS: -1.30 Total: -4.52 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -30.42 -6.93 -37.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238556450.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.721 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds