Wall clock time and date at job start Mon Mar 30 2020 02:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00233 * 2 1 4 4 H 1.48504 * 109.47069 * 269.99365 * 3 2 1 5 5 H 1.48497 * 109.47337 * 29.99486 * 3 2 1 6 6 H 1.48502 * 109.47298 * 149.99537 * 3 2 1 7 7 C 1.38816 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00000 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00139 * 180.02562 * 7 2 1 10 10 C 1.46507 * 119.99711 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.46955 * 324.99786 * 10 9 7 12 12 C 1.52996 * 109.47258 * 85.00171 * 10 9 7 13 13 C 1.52997 * 109.47131 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46991 * 299.99311 * 13 12 10 15 15 C 1.53006 * 109.46626 * 60.00378 * 14 13 12 16 16 C 1.52997 * 109.47127 * 299.99539 * 15 14 13 17 17 H 1.09002 * 109.47153 * 180.02562 * 16 15 14 18 18 Cl 1.80300 * 109.47276 * 300.00394 * 16 15 14 19 19 H 0.97001 * 119.99620 * 0.02562 * 1 2 3 20 20 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 21 21 H 1.09001 * 109.46993 * 300.00050 * 12 10 9 22 22 H 1.09000 * 109.47380 * 59.99156 * 12 10 9 23 23 H 1.09002 * 109.47153 * 179.97438 * 13 12 10 24 24 H 1.08993 * 109.47194 * 60.00154 * 13 12 10 25 25 H 1.08993 * 109.47839 * 300.00447 * 14 13 12 26 26 H 1.09000 * 109.47160 * 180.02562 * 14 13 12 27 27 H 1.09001 * 109.46801 * 59.99811 * 15 14 13 28 28 H 1.09001 * 109.46998 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 1 3.5644 -3.2066 0.5902 12 6 4.2588 -2.9752 -1.4360 13 6 5.0242 -4.3000 -1.4360 14 6 6.4112 -4.0875 -0.8261 15 6 6.2645 -3.5833 0.6110 16 6 5.4991 -2.2585 0.6111 17 1 5.3949 -1.8991 1.6348 18 17 6.4042 -1.0413 -0.3636 19 1 -0.4850 0.8401 -0.0004 20 1 3.8647 -0.3622 0.0014 21 1 3.2707 -3.1261 -1.8707 22 1 4.8063 -2.2396 -2.0251 23 1 5.1283 -4.6594 -2.4597 24 1 4.4770 -5.0358 -0.8469 25 1 6.9585 -3.3517 -1.4152 26 1 6.9568 -5.0312 -0.8265 27 1 5.7173 -4.3192 1.2002 28 1 7.2526 -3.4323 1.0457 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238556450.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:46 Heat of formation + Delta-G solvation = -38.806304 kcal Electronic energy + Delta-G solvation = -11739.742886 eV Core-core repulsion = 9621.986168 eV Total energy + Delta-G solvation = -2117.756718 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 203.077 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.72323 -36.41816 -35.90038 -33.40048 -31.46361 -29.94992 -25.38948 -23.44855 -22.44828 -20.85766 -19.55170 -17.06928 -16.52805 -15.87558 -15.37784 -15.24001 -14.62601 -14.45849 -13.78024 -13.46768 -13.15612 -12.96835 -12.64474 -12.31254 -12.03148 -11.90321 -11.85883 -11.68910 -11.31442 -11.10598 -10.93648 -10.77035 -9.32553 -8.04156 -5.36539 1.34937 1.36904 1.39595 1.44400 2.45960 3.27159 3.44705 3.71485 3.92446 4.09145 4.23294 4.38258 4.54499 4.56420 4.63071 4.88036 4.95496 5.12078 5.24646 5.30302 5.35298 5.50111 5.61095 5.76236 6.20200 7.06251 7.82424 8.01167 9.17298 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.045110 B = 0.012110 C = 0.010400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.551355 B = 2311.494771 C = 2691.585369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.059 4.059 3 Si 0.942 3.058 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.255 1.255 7 C -0.225 4.225 8 H 0.062 0.938 9 N -0.753 5.753 10 C 0.171 3.829 11 H 0.066 0.934 12 C -0.135 4.135 13 C -0.112 4.112 14 C -0.118 4.118 15 C -0.114 4.114 16 C 0.000 4.000 17 H 0.100 0.900 18 Cl -0.200 7.200 19 H 0.257 0.743 20 H 0.366 0.634 21 H 0.038 0.962 22 H 0.055 0.945 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.822 -7.755 0.379 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.251 4.251 3 Si 0.769 3.231 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.180 1.180 7 C -0.356 4.356 8 H 0.080 0.920 9 N -0.397 5.397 10 C 0.063 3.937 11 H 0.084 0.916 12 C -0.175 4.175 13 C -0.150 4.150 14 C -0.155 4.155 15 C -0.151 4.151 16 C -0.044 4.044 17 H 0.118 0.882 18 Cl -0.174 7.174 19 H 0.066 0.934 20 H 0.200 0.800 21 H 0.057 0.943 22 H 0.073 0.927 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.114 0.886 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.678 -7.742 0.328 17.489 hybrid contribution -0.238 1.438 -0.179 1.468 sum 15.440 -6.304 0.149 16.678 Atomic orbital electron populations 1.69859 1.06872 1.26524 1.59958 1.25370 0.95975 1.00742 1.02990 0.85598 0.78775 0.80633 0.78050 1.20870 1.21866 1.18024 1.19036 0.82455 0.93482 1.40670 0.91977 1.42901 1.02608 1.03939 1.90226 1.20667 0.89621 0.87754 0.95624 0.91594 1.22124 0.99435 0.97997 0.97948 1.21507 0.96072 0.95921 1.01493 1.21574 0.96749 1.02106 0.95099 1.21856 1.01030 0.93277 0.98970 1.24669 0.92483 0.91267 0.95966 0.88222 1.98677 1.78411 1.63408 1.76933 0.93361 0.80012 0.94345 0.92659 0.91299 0.91443 0.91998 0.89299 0.88608 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.44 13.97 21.65 0.30 -63.14 15 2 C -0.06 -3.54 5.50 84.86 0.47 -3.07 15 3 Si 0.94 46.98 27.74 68.60 1.90 48.88 15 4 H -0.28 -13.95 7.11 99.48 0.71 -13.24 15 5 H -0.29 -14.56 7.11 99.48 0.71 -13.85 15 6 H -0.26 -11.78 6.52 99.48 0.65 -11.13 15 7 C -0.23 -12.89 10.41 84.03 0.87 -12.01 15 8 H 0.06 3.84 8.06 -2.91 -0.02 3.81 15 9 N -0.75 -35.53 4.85 -322.93 -1.57 -37.10 15 10 C 0.17 6.28 2.48 44.99 0.11 6.40 15 11 H 0.07 2.47 8.08 -2.39 -0.02 2.45 15 12 C -0.13 -4.61 5.30 30.59 0.16 -4.45 15 13 C -0.11 -2.73 5.92 30.59 0.18 -2.55 15 14 C -0.12 -2.40 5.72 30.60 0.18 -2.23 15 15 C -0.11 -2.33 5.52 30.60 0.17 -2.16 15 16 C 0.00 0.01 3.23 30.59 0.10 0.11 15 17 H 0.10 2.85 8.14 -2.39 -0.02 2.83 15 18 Cl -0.20 -6.25 25.02 -2.72 -0.07 -6.31 15 19 H 0.26 15.89 8.31 -92.71 -0.77 15.12 15 20 H 0.37 17.15 4.78 -92.71 -0.44 16.70 15 21 H 0.04 1.51 8.14 -2.39 -0.02 1.49 15 22 H 0.05 1.98 7.06 -2.39 -0.02 1.96 15 23 H 0.07 1.54 8.14 -2.39 -0.02 1.52 15 24 H 0.07 1.54 8.14 -2.39 -0.02 1.52 15 25 H 0.06 1.39 7.06 -2.39 -0.02 1.37 15 26 H 0.09 1.36 8.14 -2.39 -0.02 1.34 15 27 H 0.10 1.71 8.14 -2.39 -0.02 1.69 15 28 H 0.09 1.55 8.14 -2.39 -0.02 1.53 15 Total: -1.00 -65.96 236.73 3.44 -62.51 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.64 Total: 15.12 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 2.24 Total: -19.97 kcal Atomic # 7 Polarization: -98.97 SS G_CDS: -1.26 Total: -100.24 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.90 Total: 48.88 kcal Atomic # 17 Polarization: -6.25 SS G_CDS: -0.07 Total: -6.31 kcal Total: -65.96 3.44 -62.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238556450.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.708 kcal (2) G-P(sol) polarization free energy of solvation -65.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds