Wall clock time and date at job start Mon Mar 30 2020 02:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39459 * 119.73993 * 304.02660 * 3 2 1 5 5 C 1.38492 * 119.05138 * 179.97438 * 4 3 2 6 6 C 1.50693 * 120.74703 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.47410 * 339.98205 * 6 5 4 8 8 N 1.46899 * 109.47587 * 219.98441 * 6 5 4 9 9 C 1.50702 * 109.47030 * 99.98059 * 6 5 4 10 10 H 1.07998 * 119.99744 * 0.02562 * 9 6 5 11 11 C 1.37883 * 119.99791 * 180.02562 * 9 6 5 12 12 N 1.31509 * 120.00364 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 119.99703 * 180.02562 * 11 9 6 14 14 H 1.48498 * 109.46954 * 60.00095 * 13 11 9 15 15 H 1.48492 * 109.47182 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47051 * 300.00243 * 13 11 9 17 17 C 1.38704 * 118.50710 * 0.02562 * 5 4 3 18 18 C 1.38463 * 119.37984 * 0.27770 * 17 5 4 19 19 N 1.31584 * 120.91538 * 359.44192 * 18 17 5 20 20 H 1.07994 * 120.47127 * 359.97438 * 4 3 2 21 21 H 1.00903 * 110.99537 * 299.99798 * 8 6 5 22 22 H 1.00896 * 111.00400 * 63.94652 * 8 6 5 23 23 H 0.97001 * 120.00555 * 180.02562 * 12 11 9 24 24 H 1.08002 * 120.30556 * 179.97438 * 17 5 4 25 25 H 1.08007 * 119.53955 * 179.72840 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2601 -0.6766 1.0036 5 6 4.6449 -0.6672 0.9895 6 6 5.4312 -1.3868 2.0547 7 1 4.7971 -1.5508 2.9260 8 7 6.5920 -0.5733 2.4403 9 6 5.9033 -2.7143 1.5201 10 1 5.6588 -3.0073 0.5098 11 6 6.6474 -3.5548 2.3208 12 7 6.9447 -3.1982 3.5512 13 14 7.2332 -5.2000 1.6578 14 1 8.0979 -4.9760 0.4715 15 1 8.0069 -5.9097 2.7079 16 1 6.0601 -6.0223 1.2670 17 6 5.2919 0.0196 -0.0272 18 6 4.5416 0.6758 -0.9882 19 7 3.2264 0.6469 -0.9551 20 1 2.7238 -1.2010 1.7806 21 1 7.1959 -0.4072 1.6492 22 1 6.3006 0.2960 2.8615 23 1 7.4685 -3.7893 4.1144 24 1 6.3709 0.0463 -0.0660 25 1 5.0427 1.2151 -1.7785 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238596236.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:08 Heat of formation + Delta-G solvation = 66.140753 kcal Electronic energy + Delta-G solvation = -12015.755046 eV Core-core repulsion = 9801.441681 eV Total energy + Delta-G solvation = -2214.313366 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.04600 -36.45883 -35.25810 -32.16280 -31.34352 -30.33805 -26.39090 -24.52461 -23.30427 -21.42503 -18.14676 -16.74521 -16.13364 -15.79691 -14.74624 -14.52135 -14.38561 -14.00537 -13.05137 -12.98981 -12.69400 -12.56391 -12.44754 -11.85819 -11.15148 -10.95319 -10.84720 -10.23276 -9.70235 -9.40229 -8.89941 -8.81679 -8.56367 -7.34570 -6.03876 -4.21042 0.88791 1.59648 2.68806 3.07423 3.27090 3.32613 3.35217 3.74871 4.18437 4.38139 4.88782 5.19464 5.29802 5.32032 5.48460 5.68571 5.90635 6.08972 6.40679 6.55912 6.88470 7.23346 7.50693 7.72996 7.94585 7.99791 8.40366 8.78247 8.93811 9.49238 11.00285 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.040505 B = 0.008842 C = 0.008343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.112306 B = 3166.076955 C = 3355.179310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.281 3.719 3 C 0.171 3.829 4 C -0.116 4.116 5 C -0.032 4.032 6 C 0.253 3.747 7 H 0.055 0.945 8 N -0.807 5.807 9 C -0.539 4.539 10 H 0.055 0.945 11 C 0.087 3.913 12 N -0.843 5.843 13 Si 0.888 3.112 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.146 4.146 18 C 0.099 3.901 19 N -0.473 5.473 20 H 0.141 0.859 21 H 0.320 0.680 22 H 0.301 0.699 23 H 0.259 0.741 24 H 0.139 0.861 25 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.977 5.500 -4.649 7.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.036 4.036 3 C 0.034 3.966 4 C -0.139 4.139 5 C -0.042 4.042 6 C 0.143 3.857 7 H 0.073 0.927 8 N -0.333 5.333 9 C -0.577 4.577 10 H 0.073 0.927 11 C -0.121 4.121 12 N -0.476 5.476 13 Si 0.716 3.284 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.203 1.203 17 C -0.167 4.167 18 C -0.060 4.060 19 N -0.184 5.184 20 H 0.158 0.842 21 H 0.133 0.867 22 H 0.112 0.888 23 H 0.069 0.931 24 H 0.157 0.843 25 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.902 5.274 -4.594 7.572 hybrid contribution 0.944 -0.686 -0.495 1.268 sum -1.958 4.588 -5.088 7.126 Atomic orbital electron populations 1.81180 1.11726 1.08265 1.07878 1.25168 0.91879 0.93329 0.93212 1.16350 0.85641 0.99899 0.94738 1.22016 0.95077 0.98379 0.98458 1.22396 0.93650 0.91120 0.97052 1.18342 0.87195 0.90814 0.89342 0.92700 1.59167 1.19964 1.19855 1.34338 1.20704 1.37092 1.00317 0.99631 0.92654 1.24922 0.95109 0.97395 0.94668 1.70072 1.35474 1.35524 1.06580 0.86752 0.78949 0.84046 0.78702 1.20195 1.21228 1.20255 1.22263 1.02082 0.97511 0.94844 1.22603 0.88296 0.97203 0.97925 1.67425 1.10725 1.17582 1.22667 0.84160 0.86706 0.88826 0.93088 0.84345 0.82351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.17 18.54 41.84 0.78 -6.39 15 2 C 0.28 4.61 15.53 -22.47 -0.35 4.26 15 3 C 0.17 2.78 6.58 -85.07 -0.56 2.22 15 4 C -0.12 -1.93 9.46 -39.03 -0.37 -2.30 15 5 C -0.03 -0.56 4.90 -104.36 -0.51 -1.08 15 6 C 0.25 5.46 2.88 -70.02 -0.20 5.26 15 7 H 0.06 1.31 8.04 -51.93 -0.42 0.89 15 8 N -0.81 -16.45 8.38 -6.65 -0.06 -16.50 15 9 C -0.54 -13.35 8.71 -34.44 -0.30 -13.65 15 10 H 0.06 1.38 7.74 -52.49 -0.41 0.97 15 11 C 0.09 2.25 5.39 -17.82 -0.10 2.15 15 12 N -0.84 -22.81 12.77 55.43 0.71 -22.10 15 13 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 15 14 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 15 H -0.29 -6.48 7.11 56.52 0.40 -6.08 15 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 17 C -0.15 -2.23 9.39 -39.33 -0.37 -2.60 15 18 C 0.10 1.38 11.18 -17.57 -0.20 1.18 15 19 N -0.47 -7.53 10.28 -11.16 -0.11 -7.65 15 20 H 0.14 2.19 8.06 -52.49 -0.42 1.77 15 21 H 0.32 6.05 7.43 -39.29 -0.29 5.76 15 22 H 0.30 5.40 9.06 -39.29 -0.36 5.04 15 23 H 0.26 6.78 8.31 -40.82 -0.34 6.44 15 24 H 0.14 1.93 6.77 -52.49 -0.36 1.58 15 25 H 0.16 1.64 8.06 -52.48 -0.42 1.21 15 LS Contribution 238.30 15.07 3.59 3.59 Total: -1.00 -27.77 238.30 -4.88 -32.65 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -1.81 Total: 5.95 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -2.95 Total: -4.56 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 1.31 Total: -52.64 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -27.77 -4.88 -32.65 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238596236.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.788 kcal (2) G-P(sol) polarization free energy of solvation -27.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds