Wall clock time and date at job start Mon Mar 30 2020 02:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39459 * 119.73993 * 304.02660 * 3 2 1 5 5 C 1.38492 * 119.05138 * 179.97438 * 4 3 2 6 6 C 1.50693 * 120.74703 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.47410 * 339.98205 * 6 5 4 8 8 N 1.46899 * 109.47587 * 219.98441 * 6 5 4 9 9 C 1.50702 * 109.47030 * 99.98059 * 6 5 4 10 10 H 1.07998 * 119.99744 * 0.02562 * 9 6 5 11 11 C 1.37883 * 119.99791 * 180.02562 * 9 6 5 12 12 N 1.31509 * 120.00364 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 119.99703 * 180.02562 * 11 9 6 14 14 H 1.48498 * 109.46954 * 60.00095 * 13 11 9 15 15 H 1.48492 * 109.47182 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47051 * 300.00243 * 13 11 9 17 17 C 1.38704 * 118.50710 * 0.02562 * 5 4 3 18 18 C 1.38463 * 119.37984 * 0.27770 * 17 5 4 19 19 N 1.31584 * 120.91538 * 359.44192 * 18 17 5 20 20 H 1.07994 * 120.47127 * 359.97438 * 4 3 2 21 21 H 1.00903 * 110.99537 * 299.99798 * 8 6 5 22 22 H 1.00896 * 111.00400 * 63.94652 * 8 6 5 23 23 H 0.97001 * 120.00555 * 180.02562 * 12 11 9 24 24 H 1.08002 * 120.30556 * 179.97438 * 17 5 4 25 25 H 1.08007 * 119.53955 * 179.72840 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2601 -0.6766 1.0036 5 6 4.6449 -0.6672 0.9895 6 6 5.4312 -1.3868 2.0547 7 1 4.7971 -1.5508 2.9260 8 7 6.5920 -0.5733 2.4403 9 6 5.9033 -2.7143 1.5201 10 1 5.6588 -3.0073 0.5098 11 6 6.6474 -3.5548 2.3208 12 7 6.9447 -3.1982 3.5512 13 14 7.2332 -5.2000 1.6578 14 1 8.0979 -4.9760 0.4715 15 1 8.0069 -5.9097 2.7079 16 1 6.0601 -6.0223 1.2670 17 6 5.2919 0.0196 -0.0272 18 6 4.5416 0.6758 -0.9882 19 7 3.2264 0.6469 -0.9551 20 1 2.7238 -1.2010 1.7806 21 1 7.1959 -0.4072 1.6492 22 1 6.3006 0.2960 2.8615 23 1 7.4685 -3.7893 4.1144 24 1 6.3709 0.0463 -0.0660 25 1 5.0427 1.2151 -1.7785 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238596236.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:08 Heat of formation + Delta-G solvation = 47.184742 kcal Electronic energy + Delta-G solvation = -12016.577041 eV Core-core repulsion = 9801.441681 eV Total energy + Delta-G solvation = -2215.135360 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.32561 -37.82266 -36.81780 -33.95648 -32.60637 -31.82939 -28.16445 -25.95953 -24.67221 -22.93783 -19.55854 -18.51605 -17.49401 -17.11832 -16.51235 -15.95203 -15.68350 -15.51077 -14.52557 -14.34182 -14.25937 -13.96213 -13.86401 -13.42884 -12.77630 -12.71227 -12.50186 -11.99378 -11.43328 -10.69878 -10.54126 -10.33219 -10.10589 -8.92398 -7.98018 -6.19261 -0.38411 0.32236 1.38511 1.48261 1.50209 1.55874 1.78712 2.45248 2.50082 2.94788 3.27802 3.74543 3.97708 4.04418 4.22635 4.40455 4.50348 4.74118 5.06760 5.14837 5.58843 5.65926 5.77275 6.13374 6.20419 6.65078 6.77848 7.12916 7.28812 7.54095 9.05165 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.040505 B = 0.008842 C = 0.008343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.112306 B = 3166.076955 C = 3355.179310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.293 3.707 3 C 0.170 3.830 4 C -0.118 4.118 5 C -0.050 4.050 6 C 0.258 3.742 7 H 0.023 0.977 8 N -0.819 5.819 9 C -0.545 4.545 10 H 0.051 0.949 11 C 0.042 3.958 12 N -0.876 5.876 13 Si 0.943 3.057 14 H -0.271 1.271 15 H -0.289 1.289 16 H -0.277 1.277 17 C -0.137 4.137 18 C 0.113 3.887 19 N -0.480 5.480 20 H 0.141 0.859 21 H 0.329 0.671 22 H 0.316 0.684 23 H 0.256 0.744 24 H 0.154 0.846 25 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.511 6.128 -6.185 8.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.024 4.024 3 C 0.033 3.967 4 C -0.142 4.142 5 C -0.060 4.060 6 C 0.148 3.852 7 H 0.041 0.959 8 N -0.347 5.347 9 C -0.583 4.583 10 H 0.069 0.931 11 C -0.163 4.163 12 N -0.511 5.511 13 Si 0.770 3.230 14 H -0.196 1.196 15 H -0.215 1.215 16 H -0.203 1.203 17 C -0.158 4.158 18 C -0.046 4.046 19 N -0.191 5.191 20 H 0.159 0.841 21 H 0.143 0.857 22 H 0.128 0.872 23 H 0.065 0.935 24 H 0.172 0.828 25 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -2.448 5.906 -6.143 8.866 hybrid contribution 0.794 -0.816 -0.057 1.140 sum -1.654 5.090 -6.200 8.190 Atomic orbital electron populations 1.81190 1.12219 1.08948 1.08525 1.25164 0.91833 0.92754 0.92632 1.16252 0.85414 1.00181 0.94854 1.21987 0.94848 0.98553 0.98769 1.21990 0.93848 0.92746 0.97439 1.17937 0.87406 0.90592 0.89250 0.95923 1.58931 1.19969 1.20684 1.35119 1.21040 1.36237 1.01791 0.99268 0.93109 1.25573 0.95601 1.00208 0.94907 1.70187 1.36714 1.36603 1.07615 0.85878 0.78355 0.80723 0.78092 1.19567 1.21478 1.20276 1.22448 1.02962 0.96404 0.93972 1.23236 0.87401 0.95980 0.97989 1.67509 1.11761 1.17424 1.22403 0.84091 0.85680 0.87240 0.93483 0.82820 0.78015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -14.56 18.54 19.00 0.35 -14.20 15 2 C 0.29 9.27 15.53 88.33 1.37 10.64 15 3 C 0.17 5.23 6.58 40.54 0.27 5.50 15 4 C -0.12 -3.83 9.46 22.62 0.21 -3.62 15 5 C -0.05 -1.72 4.90 -19.69 -0.10 -1.81 15 6 C 0.26 11.14 2.88 43.42 0.13 11.26 15 7 H 0.02 1.12 8.04 -2.38 -0.02 1.10 15 8 N -0.82 -32.84 8.38 -174.96 -1.47 -34.31 15 9 C -0.54 -26.83 8.71 25.60 0.22 -26.61 15 10 H 0.05 2.49 7.74 -2.91 -0.02 2.47 15 11 C 0.04 2.14 5.39 84.66 0.46 2.60 15 12 N -0.88 -47.80 12.77 21.45 0.27 -47.53 15 13 Si 0.94 40.96 29.54 68.60 2.03 42.98 15 14 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 15 H -0.29 -12.56 7.11 99.48 0.71 -11.85 15 16 H -0.28 -11.93 7.11 99.48 0.71 -11.22 15 17 C -0.14 -3.80 9.39 22.43 0.21 -3.59 15 18 C 0.11 2.72 11.18 84.78 0.95 3.66 15 19 N -0.48 -13.91 10.28 -189.21 -1.94 -15.85 15 20 H 0.14 4.44 8.06 -2.91 -0.02 4.42 15 21 H 0.33 11.98 7.43 -89.69 -0.67 11.32 15 22 H 0.32 11.07 9.06 -89.70 -0.81 10.26 15 23 H 0.26 13.54 8.31 -92.71 -0.77 12.77 15 24 H 0.15 3.78 6.77 -2.91 -0.02 3.76 15 25 H 0.20 3.07 8.06 -2.91 -0.02 3.05 15 Total: -1.00 -58.23 238.30 2.72 -55.51 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -0.24 Total: 15.38 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 3.72 Total: -1.97 kcal Atomic # 7 Polarization: -109.11 SS G_CDS: -2.78 Total: -111.89 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.98 kcal Total: -58.23 2.72 -55.51 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238596236.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.692 kcal (2) G-P(sol) polarization free energy of solvation -58.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds