Wall clock time and date at job start Mon Mar 30 2020 02:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39462 * 119.73885 * 219.68898 * 3 2 1 5 5 C 1.38484 * 119.05379 * 180.02562 * 4 3 2 6 6 C 1.50700 * 120.74910 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.46604 * 19.98333 * 6 5 4 8 8 N 1.46897 * 109.47406 * 139.97897 * 6 5 4 9 9 C 1.50695 * 109.47538 * 259.98412 * 6 5 4 10 10 H 1.08006 * 119.99985 * 359.97438 * 9 6 5 11 11 C 1.37871 * 120.00244 * 180.02562 * 9 6 5 12 12 N 1.31521 * 119.99963 * 180.02562 * 11 9 6 13 13 Si 1.86797 * 120.00296 * 359.97438 * 11 9 6 14 14 H 1.48502 * 109.47012 * 90.00057 * 13 11 9 15 15 H 1.48498 * 109.47735 * 210.00787 * 13 11 9 16 16 H 1.48510 * 109.47120 * 330.00396 * 13 11 9 17 17 C 1.38702 * 118.50569 * 359.97438 * 5 4 3 18 18 C 1.38465 * 119.38152 * 359.97438 * 17 5 4 19 19 N 1.31583 * 120.91642 * 0.02562 * 18 17 5 20 20 H 1.08003 * 120.46827 * 0.04467 * 4 3 2 21 21 H 1.00901 * 110.99781 * 296.05586 * 8 6 5 22 22 H 1.00903 * 110.99686 * 60.00356 * 8 6 5 23 23 H 0.97005 * 119.99604 * 179.97438 * 12 11 9 24 24 H 1.08002 * 120.30904 * 180.26940 * 17 5 4 25 25 H 1.08003 * 119.53772 * 179.97438 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2594 0.9328 0.7733 5 6 4.6441 0.9210 0.7623 6 6 5.4296 1.9112 1.5830 7 1 4.7949 2.3128 2.3731 8 7 6.5906 1.2393 2.1818 9 6 5.9014 3.0356 0.6975 10 1 5.6573 3.0331 -0.3546 11 6 6.6456 4.0668 1.2301 12 7 7.0569 5.0483 0.4572 13 14 7.0685 4.0707 3.0495 14 1 8.3571 3.3632 3.2597 15 1 7.1894 5.4717 3.5267 16 1 5.9951 3.3802 3.8088 17 6 5.2919 -0.0227 -0.0210 18 6 4.5422 -0.9194 -0.7635 19 7 3.2271 -0.8870 -0.7355 20 1 2.7224 1.6533 1.3725 21 1 6.2992 0.5230 2.8299 22 1 7.1949 0.8582 1.4693 23 1 7.5802 5.7740 0.8321 24 1 6.3709 -0.0608 -0.0479 25 1 5.0440 -1.6550 -1.3747 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238622696.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:10 Heat of formation + Delta-G solvation = 43.815151 kcal Electronic energy + Delta-G solvation = -12058.620872 eV Core-core repulsion = 9843.339396 eV Total energy + Delta-G solvation = -2215.281476 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.38400 -37.88128 -37.00523 -34.15957 -32.66291 -32.14260 -28.48787 -25.96448 -24.72437 -22.81649 -19.54031 -19.02116 -17.61345 -17.18777 -16.53245 -16.05869 -15.70745 -15.57950 -14.85110 -14.35286 -14.34308 -13.98475 -13.92972 -13.68737 -12.76398 -12.71654 -12.60886 -11.78434 -11.50702 -10.74980 -10.70857 -10.42815 -10.13417 -9.38996 -8.22391 -6.37424 -0.40928 0.27420 1.37593 1.58478 1.63428 1.76103 1.77010 2.44126 2.55131 2.90447 3.13377 3.70445 3.88091 3.99067 4.15308 4.24341 4.36973 4.70076 4.94002 4.97219 5.39282 5.51959 5.64158 6.14036 6.19432 6.45572 6.75366 6.79505 7.01453 7.40352 8.90171 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.044481 B = 0.009168 C = 0.008669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.330702 B = 3053.216090 C = 3228.948793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.292 3.708 3 C 0.170 3.830 4 C -0.116 4.116 5 C -0.046 4.046 6 C 0.223 3.777 7 H 0.055 0.945 8 N -0.843 5.843 9 C -0.516 4.516 10 H 0.034 0.966 11 C 0.031 3.969 12 N -0.946 5.946 13 Si 0.998 3.002 14 H -0.274 1.274 15 H -0.331 1.331 16 H -0.256 1.256 17 C -0.135 4.135 18 C 0.113 3.887 19 N -0.479 5.479 20 H 0.148 0.852 21 H 0.338 0.662 22 H 0.346 0.654 23 H 0.265 0.735 24 H 0.157 0.843 25 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.314 -11.632 2.513 11.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.025 4.025 3 C 0.033 3.967 4 C -0.139 4.139 5 C -0.056 4.056 6 C 0.113 3.887 7 H 0.072 0.928 8 N -0.375 5.375 9 C -0.555 4.555 10 H 0.053 0.947 11 C -0.169 4.169 12 N -0.585 5.585 13 Si 0.828 3.172 14 H -0.200 1.200 15 H -0.261 1.261 16 H -0.180 1.180 17 C -0.156 4.156 18 C -0.047 4.047 19 N -0.190 5.190 20 H 0.166 0.834 21 H 0.151 0.849 22 H 0.161 0.839 23 H 0.073 0.927 24 H 0.175 0.825 25 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -3.268 -11.390 2.307 12.072 hybrid contribution 0.802 0.377 0.399 0.972 sum -2.466 -11.012 2.706 11.605 Atomic orbital electron populations 1.81196 1.12255 1.08644 1.08700 1.25155 0.91827 0.92655 0.92820 1.16257 0.85451 0.96321 0.98694 1.22021 0.94738 0.98023 0.99121 1.21528 0.93721 0.94729 0.95607 1.18446 0.88355 0.89735 0.92146 0.92767 1.59011 1.19890 1.35934 1.22632 1.20897 1.34339 1.05153 0.95088 0.94737 1.25814 0.94082 0.93943 1.03056 1.70083 1.37903 1.12034 1.38497 0.84884 0.79982 0.73120 0.79251 1.20018 1.26149 1.17996 1.22481 1.03112 0.94571 0.95405 1.23238 0.87398 0.97676 0.96352 1.67505 1.11772 1.21625 1.18080 0.83393 0.84856 0.83870 0.92660 0.82533 0.78070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -14.16 18.54 19.00 0.35 -13.81 15 2 C 0.29 8.93 15.53 88.33 1.37 10.30 15 3 C 0.17 4.99 6.58 40.54 0.27 5.26 15 4 C -0.12 -3.48 9.46 22.62 0.21 -3.27 15 5 C -0.05 -1.45 4.90 -19.69 -0.10 -1.55 15 6 C 0.22 8.50 2.37 43.42 0.10 8.61 15 7 H 0.05 2.13 7.10 -2.38 -0.02 2.11 15 8 N -0.84 -27.49 6.60 -174.96 -1.15 -28.65 15 9 C -0.52 -26.04 9.29 25.60 0.24 -25.80 15 10 H 0.03 1.97 7.98 -2.91 -0.02 1.94 15 11 C 0.03 1.66 5.47 84.65 0.46 2.12 15 12 N -0.95 -56.18 13.96 21.45 0.30 -55.88 15 13 Si 1.00 45.01 26.03 68.60 1.79 46.80 15 14 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 15 H -0.33 -15.56 7.11 99.48 0.71 -14.86 15 16 H -0.26 -10.63 6.54 99.48 0.65 -9.98 15 17 C -0.14 -3.50 9.39 22.43 0.21 -3.29 15 18 C 0.11 2.59 11.18 84.78 0.95 3.54 15 19 N -0.48 -13.42 10.28 -189.21 -1.94 -15.36 15 20 H 0.15 4.15 8.06 -2.91 -0.02 4.12 15 21 H 0.34 8.77 9.06 -89.69 -0.81 7.95 15 22 H 0.35 10.38 7.42 -89.69 -0.67 9.71 15 23 H 0.26 14.93 8.31 -92.70 -0.77 14.16 15 24 H 0.16 3.51 6.77 -2.91 -0.02 3.50 15 25 H 0.20 2.93 8.06 -2.91 -0.02 2.91 15 Total: -1.00 -63.57 233.10 2.77 -60.80 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -0.29 Total: 10.18 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 3.72 Total: -4.08 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -2.45 Total: -113.69 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.79 Total: 46.80 kcal Total: -63.57 2.77 -60.80 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238622696.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.619 kcal (2) G-P(sol) polarization free energy of solvation -63.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds