Wall clock time and date at job start Mon Mar 30 2020 02:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86807 * 120.00113 * 2 1 4 4 H 1.48499 * 109.46719 * 90.00134 * 3 2 1 5 5 H 1.48495 * 109.46934 * 209.99637 * 3 2 1 6 6 H 1.48494 * 109.47214 * 330.00125 * 3 2 1 7 7 C 1.39944 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00332 * 162.32809 * 7 2 1 9 9 C 1.41399 * 119.99834 * 342.33026 * 7 2 1 10 10 C 1.40730 * 120.28823 * 335.51905 * 9 7 2 11 11 C 1.37456 * 119.67385 * 179.75006 * 10 9 7 12 12 C 1.38966 * 120.54930 * 0.54582 * 11 10 9 13 13 C 1.38681 * 120.24065 * 359.71290 * 12 11 10 14 14 C 1.37901 * 120.10508 * 0.02562 * 13 12 11 15 15 C 1.51412 * 109.70312 * 180.02562 * 13 12 11 16 16 H 1.08998 * 110.30292 * 223.83287 * 15 13 12 17 17 N 1.46902 * 110.30361 * 101.67931 * 15 13 12 18 18 C 1.54325 * 105.18342 * 342.75327 * 15 13 12 19 19 C 1.51459 * 130.12448 * 179.73729 * 12 11 10 20 20 H 0.97002 * 119.99651 * 359.97438 * 1 2 3 21 21 H 1.08001 * 120.16323 * 0.02562 * 10 9 7 22 22 H 1.08001 * 119.72496 * 180.25615 * 11 10 9 23 23 H 1.08000 * 119.99229 * 179.97438 * 14 13 12 24 24 H 1.00895 * 110.99809 * 180.02562 * 17 15 13 25 25 H 1.00896 * 110.99866 * 303.95685 * 17 15 13 26 26 H 1.09001 * 110.81302 * 268.24801 * 18 15 13 27 27 H 1.08998 * 110.98338 * 144.80554 * 18 15 13 28 28 H 1.08996 * 110.29272 * 316.18511 * 19 12 11 29 29 H 1.09001 * 110.29528 * 78.31541 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 1.4001 5 1 3.5398 1.4401 -0.6999 6 1 1.4398 2.6527 -0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0498 -1.2342 -0.2834 9 6 1.3510 -2.4074 0.3728 10 6 0.2184 -2.3648 1.2070 11 6 -0.4136 -3.5343 1.5568 12 6 0.0634 -4.7580 1.1027 13 6 1.1819 -4.8116 0.2847 14 6 1.8271 -3.6493 -0.0820 15 6 1.4894 -6.2522 -0.0659 16 1 2.5596 -6.4414 0.0168 17 7 1.0200 -6.5577 -1.4240 18 6 0.7153 -7.0943 0.9702 19 6 -0.4514 -6.1601 1.3537 20 1 -0.4850 0.8401 0.0004 21 1 -0.1551 -1.4175 1.5669 22 1 -1.2853 -3.5021 2.1935 23 1 2.6982 -3.6933 -0.7189 24 1 1.2194 -7.5161 -1.6684 25 1 0.0358 -6.3576 -1.5199 26 1 1.3391 -7.3104 1.8375 27 1 0.3428 -8.0163 0.5238 28 1 -0.7073 -6.2863 2.4056 29 1 -1.3191 -6.3623 0.7258 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238640106.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:23 Heat of formation + Delta-G solvation = 6.010146 kcal Electronic energy + Delta-G solvation = -12608.018875 eV Core-core repulsion = 10494.638394 eV Total energy + Delta-G solvation = -2113.380481 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.86734 -35.66121 -33.18057 -31.39993 -29.32063 -28.33658 -25.51265 -24.23530 -21.14181 -19.70193 -19.58992 -16.93471 -15.58213 -15.20148 -14.78303 -14.26589 -13.56889 -13.36736 -13.08236 -12.32330 -11.87924 -11.73042 -11.64386 -11.23103 -10.93542 -10.77399 -10.60399 -10.35216 -10.15368 -9.69638 -9.22001 -9.04474 -8.22745 -7.37874 -7.18043 -6.71997 -4.29413 2.78423 3.01868 3.09804 3.13722 3.22265 3.96621 4.60368 5.11355 5.25405 5.32992 5.52006 5.71689 6.02062 6.13809 6.25784 6.34822 6.42125 6.50336 6.57579 7.01846 7.12085 7.29652 7.39894 7.59193 7.63941 7.88224 7.93162 8.09801 8.16962 8.32724 8.67734 8.93709 9.01267 10.23291 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.060268 B = 0.008891 C = 0.008194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.483096 B = 3148.516218 C = 3416.279283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.262 1.262 6 H -0.278 1.278 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.109 3.891 10 C -0.160 4.160 11 C -0.091 4.091 12 C -0.224 4.224 13 C -0.068 4.068 14 C -0.190 4.190 15 C 0.134 3.866 16 H 0.074 0.926 17 N -0.834 5.834 18 C -0.154 4.154 19 C -0.058 4.058 20 H 0.280 0.720 21 H 0.120 0.880 22 H 0.084 0.916 23 H 0.090 0.910 24 H 0.329 0.671 25 H 0.341 0.659 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.041 -6.595 1.263 6.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.186 1.186 6 H -0.204 1.204 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.107 3.893 10 C -0.180 4.180 11 C -0.110 4.110 12 C -0.225 4.225 13 C -0.069 4.069 14 C -0.210 4.210 15 C 0.023 3.977 16 H 0.092 0.908 17 N -0.362 5.362 18 C -0.193 4.193 19 C -0.096 4.096 20 H 0.090 0.910 21 H 0.137 0.863 22 H 0.102 0.898 23 H 0.109 0.891 24 H 0.141 0.859 25 H 0.154 0.846 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.367 -5.874 0.988 5.967 hybrid contribution -0.394 0.111 0.447 0.606 sum -0.028 -5.762 1.435 5.938 Atomic orbital electron populations 1.69831 1.07574 1.29086 1.35677 1.25890 0.94701 1.01244 0.92285 0.86316 0.80515 0.80649 0.79250 1.19333 1.18622 1.20376 1.19559 0.98065 0.91169 1.40439 0.90455 1.17514 0.91300 0.91746 0.88780 1.21244 0.99297 0.96458 1.00966 1.20161 0.98643 0.91984 1.00182 1.19815 1.01089 0.92904 1.08718 1.19751 0.96611 0.92354 0.98177 1.20474 1.03378 0.91417 1.05777 1.20770 0.97988 0.92777 0.86213 0.90811 1.58808 1.23681 1.27590 1.26141 1.23041 0.98557 0.97459 1.00293 1.20650 0.96430 0.92890 0.99580 0.90963 0.86257 0.89802 0.89128 0.85900 0.84645 0.91509 0.92276 0.92990 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.96 10.95 55.55 0.61 -20.35 15 2 C 0.08 1.94 5.15 -17.34 -0.09 1.86 15 3 Si 0.91 18.98 29.60 -169.99 -5.03 13.95 15 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 5 H -0.26 -5.42 7.11 56.52 0.40 -5.02 15 6 H -0.28 -5.69 7.11 56.52 0.40 -5.28 15 7 C -0.46 -12.56 9.06 -37.74 -0.34 -12.90 15 8 H 0.08 2.03 7.91 -52.49 -0.41 1.61 15 9 C 0.11 2.98 5.57 -106.88 -0.60 2.38 15 10 C -0.16 -4.26 8.70 -38.93 -0.34 -4.59 15 11 C -0.09 -2.20 10.01 -39.60 -0.40 -2.59 15 12 C -0.22 -5.01 6.16 -103.82 -0.64 -5.65 15 13 C -0.07 -1.56 5.69 -104.23 -0.59 -2.15 15 14 C -0.19 -4.87 9.79 -38.83 -0.38 -5.25 15 15 C 0.13 2.43 4.00 -67.82 -0.27 2.16 15 16 H 0.07 1.31 8.14 -51.93 -0.42 0.89 15 17 N -0.83 -13.79 9.28 -4.76 -0.04 -13.83 15 18 C -0.15 -2.41 6.75 -25.36 -0.17 -2.58 15 19 C -0.06 -1.04 6.77 -26.83 -0.18 -1.22 15 20 H 0.28 6.68 8.30 -40.82 -0.34 6.34 15 21 H 0.12 3.25 6.16 -52.49 -0.32 2.93 15 22 H 0.08 1.82 8.06 -52.49 -0.42 1.40 15 23 H 0.09 2.26 8.06 -52.49 -0.42 1.84 15 24 H 0.33 4.33 9.08 -39.29 -0.36 3.97 15 25 H 0.34 5.66 8.98 -39.29 -0.35 5.31 15 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 27 H 0.06 0.78 8.09 -51.93 -0.42 0.36 15 28 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 LS Contribution 245.97 15.07 3.71 3.71 Total: -1.00 -28.10 245.97 -8.30 -36.40 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -3.54 Total: 10.68 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: -4.00 Total: -30.56 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.56 Total: -34.18 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.10 -8.30 -36.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238640106.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.411 kcal (2) G-P(sol) polarization free energy of solvation -28.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds