Wall clock time and date at job start Mon Mar 30 2020 02:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86807 * 120.00113 * 2 1 4 4 H 1.48499 * 109.46719 * 90.00134 * 3 2 1 5 5 H 1.48495 * 109.46934 * 209.99637 * 3 2 1 6 6 H 1.48494 * 109.47214 * 330.00125 * 3 2 1 7 7 C 1.39944 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00332 * 162.32809 * 7 2 1 9 9 C 1.41399 * 119.99834 * 342.33026 * 7 2 1 10 10 C 1.40730 * 120.28823 * 335.51905 * 9 7 2 11 11 C 1.37456 * 119.67385 * 179.75006 * 10 9 7 12 12 C 1.38966 * 120.54930 * 0.54582 * 11 10 9 13 13 C 1.38681 * 120.24065 * 359.71290 * 12 11 10 14 14 C 1.37901 * 120.10508 * 0.02562 * 13 12 11 15 15 C 1.51412 * 109.70312 * 180.02562 * 13 12 11 16 16 H 1.08998 * 110.30292 * 223.83287 * 15 13 12 17 17 N 1.46902 * 110.30361 * 101.67931 * 15 13 12 18 18 C 1.54325 * 105.18342 * 342.75327 * 15 13 12 19 19 C 1.51459 * 130.12448 * 179.73729 * 12 11 10 20 20 H 0.97002 * 119.99651 * 359.97438 * 1 2 3 21 21 H 1.08001 * 120.16323 * 0.02562 * 10 9 7 22 22 H 1.08001 * 119.72496 * 180.25615 * 11 10 9 23 23 H 1.08000 * 119.99229 * 179.97438 * 14 13 12 24 24 H 1.00895 * 110.99809 * 180.02562 * 17 15 13 25 25 H 1.00896 * 110.99866 * 303.95685 * 17 15 13 26 26 H 1.09001 * 110.81302 * 268.24801 * 18 15 13 27 27 H 1.08998 * 110.98338 * 144.80554 * 18 15 13 28 28 H 1.08996 * 110.29272 * 316.18511 * 19 12 11 29 29 H 1.09001 * 110.29528 * 78.31541 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 1.4001 5 1 3.5398 1.4401 -0.6999 6 1 1.4398 2.6527 -0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0498 -1.2342 -0.2834 9 6 1.3510 -2.4074 0.3728 10 6 0.2184 -2.3648 1.2070 11 6 -0.4136 -3.5343 1.5568 12 6 0.0634 -4.7580 1.1027 13 6 1.1819 -4.8116 0.2847 14 6 1.8271 -3.6493 -0.0820 15 6 1.4894 -6.2522 -0.0659 16 1 2.5596 -6.4414 0.0168 17 7 1.0200 -6.5577 -1.4240 18 6 0.7153 -7.0943 0.9702 19 6 -0.4514 -6.1601 1.3537 20 1 -0.4850 0.8401 0.0004 21 1 -0.1551 -1.4175 1.5669 22 1 -1.2853 -3.5021 2.1935 23 1 2.6982 -3.6933 -0.7189 24 1 1.2194 -7.5161 -1.6684 25 1 0.0358 -6.3576 -1.5199 26 1 1.3391 -7.3104 1.8375 27 1 0.3428 -8.0163 0.5238 28 1 -0.7073 -6.2863 2.4056 29 1 -1.3191 -6.3623 0.7258 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238640106.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:22 Heat of formation + Delta-G solvation = -11.556248 kcal Electronic energy + Delta-G solvation = -12608.780611 eV Core-core repulsion = 10494.638394 eV Total energy + Delta-G solvation = -2114.142217 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.54642 -37.40935 -35.00801 -32.98610 -31.10436 -30.11718 -27.16406 -25.96181 -22.90412 -21.53237 -21.17951 -18.81176 -17.07700 -17.04269 -16.34255 -15.80924 -15.35083 -15.07063 -14.51809 -14.12195 -13.56100 -13.47225 -13.33969 -12.88463 -12.53009 -12.41136 -12.20352 -12.00977 -11.81532 -11.49412 -11.07752 -10.93959 -9.52066 -9.32086 -9.07245 -8.63501 -6.32200 0.95868 1.07975 1.37069 1.50850 1.51355 2.21037 2.69941 3.63393 3.75960 3.89561 3.96694 4.27662 4.50113 4.58068 4.68576 4.90850 4.94933 5.02323 5.12970 5.17923 5.25142 5.39602 5.51718 5.75750 6.00900 6.11660 6.19827 6.29070 6.41908 6.70181 6.74845 6.94825 7.04344 8.34405 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.060268 B = 0.008891 C = 0.008194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.483096 B = 3148.516218 C = 3416.279283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.035 3.965 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.260 1.260 6 H -0.266 1.266 7 C -0.504 4.504 8 H 0.071 0.929 9 C 0.077 3.923 10 C -0.186 4.186 11 C -0.101 4.101 12 C -0.222 4.222 13 C -0.075 4.075 14 C -0.216 4.216 15 C 0.135 3.865 16 H 0.078 0.922 17 N -0.842 5.842 18 C -0.140 4.140 19 C -0.058 4.058 20 H 0.288 0.712 21 H 0.102 0.898 22 H 0.104 0.896 23 H 0.083 0.917 24 H 0.352 0.648 25 H 0.341 0.659 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.194 -8.246 1.489 8.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.179 4.179 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.191 1.191 7 C -0.534 4.534 8 H 0.090 0.910 9 C 0.075 3.925 10 C -0.206 4.206 11 C -0.119 4.119 12 C -0.224 4.224 13 C -0.075 4.075 14 C -0.236 4.236 15 C 0.024 3.976 16 H 0.096 0.904 17 N -0.373 5.373 18 C -0.179 4.179 19 C -0.095 4.095 20 H 0.098 0.902 21 H 0.120 0.880 22 H 0.122 0.878 23 H 0.101 0.899 24 H 0.167 0.833 25 H 0.154 0.846 26 H 0.096 0.904 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.128 -7.562 1.211 7.659 hybrid contribution -0.371 0.487 0.372 0.717 sum -0.244 -7.075 1.583 7.254 Atomic orbital electron populations 1.69883 1.09028 1.30471 1.36155 1.26758 0.95505 1.04495 0.91164 0.85180 0.79004 0.75789 0.79556 1.18559 1.18335 1.19079 1.19792 0.98170 0.92624 1.42782 0.91045 1.17859 0.92202 0.92774 0.89676 1.21198 1.00192 0.96893 1.02316 1.20460 0.99074 0.92106 1.00290 1.20448 1.00398 0.94737 1.06771 1.20307 0.95954 0.94123 0.97117 1.20615 1.03940 0.92362 1.06668 1.20751 0.98913 0.90013 0.87959 0.90396 1.58662 1.23770 1.29586 1.25236 1.23007 0.97201 0.97764 0.99923 1.20753 0.97732 0.89845 1.01131 0.90178 0.87978 0.87768 0.89882 0.83315 0.84573 0.90383 0.88690 0.91280 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.15 10.95 21.83 0.24 -44.91 15 2 C 0.03 1.84 5.15 85.26 0.44 2.28 15 3 Si 0.98 39.73 29.60 68.60 2.03 41.76 15 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 15 5 H -0.26 -10.24 7.11 99.48 0.71 -9.54 15 6 H -0.27 -10.13 7.11 99.48 0.71 -9.42 15 7 C -0.50 -28.74 9.06 23.46 0.21 -28.53 15 8 H 0.07 3.97 7.91 -2.91 -0.02 3.94 15 9 C 0.08 4.41 5.57 -21.32 -0.12 4.29 15 10 C -0.19 -10.30 8.70 22.69 0.20 -10.10 15 11 C -0.10 -4.88 10.01 22.26 0.22 -4.66 15 12 C -0.22 -9.64 6.16 -19.34 -0.12 -9.76 15 13 C -0.07 -3.35 5.69 -19.61 -0.11 -3.46 15 14 C -0.22 -11.40 9.79 22.76 0.22 -11.17 15 15 C 0.13 4.54 4.00 44.84 0.18 4.72 15 16 H 0.08 2.57 8.14 -2.39 -0.02 2.55 15 17 N -0.84 -25.44 9.28 -168.97 -1.57 -27.01 15 18 C -0.14 -3.73 6.75 31.49 0.21 -3.52 15 19 C -0.06 -1.83 6.77 30.53 0.21 -1.62 15 20 H 0.29 14.09 8.30 -92.71 -0.77 13.32 15 21 H 0.10 5.87 6.16 -2.91 -0.02 5.85 15 22 H 0.10 4.47 8.06 -2.91 -0.02 4.45 15 23 H 0.08 4.34 8.06 -2.91 -0.02 4.32 15 24 H 0.35 7.93 9.08 -89.70 -0.81 7.12 15 25 H 0.34 10.36 8.98 -89.70 -0.81 9.56 15 26 H 0.08 1.95 8.14 -2.39 -0.02 1.93 15 27 H 0.09 1.93 8.09 -2.39 -0.02 1.91 15 28 H 0.07 2.00 8.14 -2.39 -0.02 1.98 15 29 H 0.07 1.97 8.14 -2.39 -0.02 1.95 15 Total: -1.00 -63.00 245.97 1.79 -61.20 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: -0.45 Total: 30.49 kcal Atomic # 6 Polarization: -63.08 SS G_CDS: 1.54 Total: -61.54 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: -1.33 Total: -71.92 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -63.00 1.79 -61.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238640106.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.648 kcal (2) G-P(sol) polarization free energy of solvation -62.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds