Wall clock time and date at job start Mon Mar 30 2020 01:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36390 * 119.75840 * 2 1 4 4 C 1.40924 * 120.27425 * 179.97438 * 3 2 1 5 5 C 1.41277 * 120.10042 * 179.97438 * 4 3 2 6 6 H 1.08001 * 120.00217 * 334.54180 * 5 4 3 7 7 C 1.39875 * 119.99931 * 154.53054 * 5 4 3 8 8 N 1.30885 * 119.99983 * 343.06609 * 7 5 4 9 9 Si 1.86802 * 119.99821 * 163.05977 * 7 5 4 10 10 H 1.48497 * 109.46882 * 90.00105 * 9 7 5 11 11 H 1.48495 * 109.47092 * 210.00304 * 9 7 5 12 12 H 1.48500 * 109.47202 * 330.00310 * 9 7 5 13 13 C 1.40529 * 119.80446 * 0.02637 * 4 3 2 14 14 C 1.39006 * 119.53474 * 359.97438 * 13 4 3 15 15 C 1.43198 * 120.14467 * 179.97438 * 14 13 4 16 16 N 4.82207 * 134.34116 * 180.02562 * 2 1 3 17 17 C 1.39137 * 119.75670 * 179.73322 * 2 1 3 18 18 O 1.35499 * 119.91217 * 359.97138 * 17 2 1 19 19 H 1.08996 * 109.47119 * 89.99424 * 1 2 3 20 20 H 1.09001 * 109.46612 * 329.99740 * 1 2 3 21 21 H 1.08999 * 109.47057 * 209.99870 * 1 2 3 22 22 H 1.07999 * 119.86666 * 0.02562 * 3 2 1 23 23 H 0.96999 * 119.99748 * 179.97438 * 8 7 5 24 24 H 1.07997 * 120.23434 * 179.97438 * 13 4 3 25 25 H 0.96702 * 113.99390 * 89.99684 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1840 1.1840 0.0000 4 6 3.5932 1.1967 0.0005 5 6 4.2907 2.4253 0.0000 6 1 3.8231 3.3116 -0.4028 7 6 5.5868 2.4939 0.5214 8 7 6.0316 1.5381 1.2971 9 14 6.6830 3.9495 0.1103 10 1 6.4865 5.0184 1.1223 11 1 8.1035 3.5168 0.1168 12 1 6.3304 4.4705 -1.2348 13 6 4.3026 -0.0163 0.0005 14 6 3.6045 -1.2184 0.0005 15 6 4.3143 -2.4621 -0.0001 16 7 4.8773 -3.4487 -0.0015 17 6 2.1976 -1.2079 0.0056 18 8 1.5133 -2.3774 0.0117 19 1 -0.3633 0.0001 -1.0276 20 1 -0.3632 0.8900 0.5139 21 1 -0.3633 -0.8900 0.5138 22 1 1.6379 2.1158 0.0004 23 1 6.9305 1.5856 1.6584 24 1 5.3826 -0.0147 0.0005 25 1 1.3143 -2.7211 -0.8700 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258044430.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:51 Heat of formation + Delta-G solvation = -11.338013 kcal Electronic energy + Delta-G solvation = -12170.203057 eV Core-core repulsion = 9920.237209 eV Total energy + Delta-G solvation = -2249.965848 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.069 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.78230 -35.96144 -35.63254 -33.66374 -31.58409 -29.72408 -26.10871 -24.99448 -22.54106 -20.62515 -17.73434 -17.43239 -16.31335 -15.45510 -14.61647 -14.57142 -13.41623 -12.96167 -12.66490 -12.58439 -12.30959 -12.12236 -11.84040 -11.61820 -11.40558 -11.27711 -10.88201 -10.78260 -10.22778 -10.02119 -9.48567 -9.25000 -7.73924 -7.46307 -6.98837 -4.56752 1.96780 2.53583 2.95739 2.98771 3.03942 3.52736 3.78140 3.88507 4.45178 4.93464 5.14956 5.40568 5.82538 5.97532 6.19096 6.45679 6.53348 6.71864 6.84868 7.00145 7.08546 7.30447 7.60557 7.66488 7.86476 8.21348 8.32939 8.48930 8.60840 8.71887 9.96054 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.035330 B = 0.011282 C = 0.008783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.346990 B = 2481.323884 C = 3187.316192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.077 4.077 3 C -0.188 4.188 4 C 0.103 3.897 5 C -0.451 4.451 6 H 0.085 0.915 7 C 0.073 3.927 8 N -0.787 5.787 9 Si 0.912 3.088 10 H -0.268 1.268 11 H -0.275 1.275 12 H -0.258 1.258 13 C -0.105 4.105 14 C -0.040 4.040 15 C 0.288 3.712 16 N -0.472 5.472 17 C 0.003 3.997 18 O -0.495 6.495 19 H 0.056 0.944 20 H 0.057 0.943 21 H 0.062 0.938 22 H 0.105 0.895 23 H 0.286 0.714 24 H 0.131 0.869 25 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.253 2.343 -3.029 5.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.078 4.078 3 C -0.209 4.209 4 C 0.101 3.899 5 C -0.479 4.479 6 H 0.103 0.897 7 C -0.146 4.146 8 N -0.412 5.412 9 Si 0.736 3.264 10 H -0.193 1.193 11 H -0.199 1.199 12 H -0.182 1.182 13 C -0.128 4.128 14 C -0.044 4.044 15 C -0.026 4.026 16 N -0.149 5.149 17 C -0.044 4.044 18 O -0.302 6.302 19 H 0.074 0.926 20 H 0.076 0.924 21 H 0.081 0.919 22 H 0.123 0.877 23 H 0.097 0.903 24 H 0.148 0.852 25 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -3.134 0.813 -2.251 3.944 hybrid contribution 0.392 0.945 -0.510 1.143 sum -2.743 1.758 -2.761 4.270 Atomic orbital electron populations 1.20591 0.92613 1.01866 1.00948 1.19284 0.94789 0.92420 1.01288 1.20690 0.94122 0.95590 1.10461 1.17495 0.90868 0.92817 0.88754 1.19584 0.98157 0.95795 1.34385 0.89659 1.25994 0.98414 0.97739 0.92479 1.69795 1.18172 1.32047 1.21146 0.86227 0.78893 0.80919 0.80335 1.19270 1.19949 1.18222 1.21402 1.00009 0.89230 1.02110 1.16395 0.91366 0.86923 1.09749 1.26034 0.91944 0.92599 0.91991 1.81033 1.10510 1.11868 1.11493 1.17610 0.87050 0.84342 1.15429 1.84774 1.76117 1.37591 1.31707 0.92563 0.92424 0.91936 0.87729 0.90277 0.85159 0.78857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.66 9.77 36.01 0.35 -1.30 15 2 C -0.08 -1.55 5.85 -104.95 -0.61 -2.17 15 3 C -0.19 -4.07 9.34 -39.23 -0.37 -4.43 15 4 C 0.10 2.47 5.56 -106.86 -0.59 1.88 15 5 C -0.45 -10.71 9.04 -37.82 -0.34 -11.05 15 6 H 0.09 1.91 7.90 -52.49 -0.41 1.49 15 7 C 0.07 1.68 5.14 -17.34 -0.09 1.59 15 8 N -0.79 -19.01 10.96 55.54 0.61 -18.41 15 9 Si 0.91 17.19 29.59 -169.99 -5.03 12.16 15 10 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 11 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 12 H -0.26 -4.80 7.11 56.52 0.40 -4.40 15 13 C -0.11 -2.53 8.39 -38.43 -0.32 -2.85 15 14 C -0.04 -0.91 5.74 -106.76 -0.61 -1.52 15 15 C 0.29 6.52 14.86 -22.48 -0.33 6.18 15 16 N -0.47 -10.86 18.54 41.83 0.78 -10.09 15 17 C 0.00 0.07 6.70 -38.32 -0.26 -0.19 15 18 O -0.49 -9.40 11.92 -18.19 -0.22 -9.62 15 19 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 20 H 0.06 0.85 8.07 -51.93 -0.42 0.43 15 21 H 0.06 0.98 7.50 -51.93 -0.39 0.59 15 22 H 0.10 2.07 8.06 -52.49 -0.42 1.65 15 23 H 0.29 6.33 8.30 -40.82 -0.34 5.99 15 24 H 0.13 3.27 6.19 -52.49 -0.32 2.94 15 25 H 0.36 5.23 9.06 45.56 0.41 5.64 15 LS Contribution 235.95 15.07 3.56 3.56 Total: -1.00 -26.28 235.95 -4.60 -30.88 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -1.12 Total: 5.38 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -3.18 Total: -13.86 kcal Atomic # 7 Polarization: -29.88 SS G_CDS: 1.38 Total: -28.49 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.22 Total: -9.62 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -26.28 -4.60 -30.88 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258044430.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.543 kcal (2) G-P(sol) polarization free energy of solvation -26.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds