Wall clock time and date at job start Mon Mar 30 2020 01:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36390 * 119.75840 * 2 1 4 4 C 1.40924 * 120.27425 * 179.97438 * 3 2 1 5 5 C 1.41277 * 120.10042 * 179.97438 * 4 3 2 6 6 H 1.08001 * 120.00217 * 334.54180 * 5 4 3 7 7 C 1.39875 * 119.99931 * 154.53054 * 5 4 3 8 8 N 1.30885 * 119.99983 * 343.06609 * 7 5 4 9 9 Si 1.86802 * 119.99821 * 163.05977 * 7 5 4 10 10 H 1.48497 * 109.46882 * 90.00105 * 9 7 5 11 11 H 1.48495 * 109.47092 * 210.00304 * 9 7 5 12 12 H 1.48500 * 109.47202 * 330.00310 * 9 7 5 13 13 C 1.40529 * 119.80446 * 0.02637 * 4 3 2 14 14 C 1.39006 * 119.53474 * 359.97438 * 13 4 3 15 15 C 1.43198 * 120.14467 * 179.97438 * 14 13 4 16 16 N 4.82207 * 134.34116 * 180.02562 * 2 1 3 17 17 C 1.39137 * 119.75670 * 179.73322 * 2 1 3 18 18 O 1.35499 * 119.91217 * 359.97138 * 17 2 1 19 19 H 1.08996 * 109.47119 * 89.99424 * 1 2 3 20 20 H 1.09001 * 109.46612 * 329.99740 * 1 2 3 21 21 H 1.08999 * 109.47057 * 209.99870 * 1 2 3 22 22 H 1.07999 * 119.86666 * 0.02562 * 3 2 1 23 23 H 0.96999 * 119.99748 * 179.97438 * 8 7 5 24 24 H 1.07997 * 120.23434 * 179.97438 * 13 4 3 25 25 H 0.96702 * 113.99390 * 89.99684 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1840 1.1840 0.0000 4 6 3.5932 1.1967 0.0005 5 6 4.2907 2.4253 0.0000 6 1 3.8231 3.3116 -0.4028 7 6 5.5868 2.4939 0.5214 8 7 6.0316 1.5381 1.2971 9 14 6.6830 3.9495 0.1103 10 1 6.4865 5.0184 1.1223 11 1 8.1035 3.5168 0.1168 12 1 6.3304 4.4705 -1.2348 13 6 4.3026 -0.0163 0.0005 14 6 3.6045 -1.2184 0.0005 15 6 4.3143 -2.4621 -0.0001 16 7 4.8773 -3.4487 -0.0015 17 6 2.1976 -1.2079 0.0056 18 8 1.5133 -2.3774 0.0117 19 1 -0.3633 0.0001 -1.0276 20 1 -0.3632 0.8900 0.5139 21 1 -0.3633 -0.8900 0.5138 22 1 1.6379 2.1158 0.0004 23 1 6.9305 1.5856 1.6584 24 1 5.3826 -0.0147 0.0005 25 1 1.3143 -2.7211 -0.8700 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258044430.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:51 Heat of formation + Delta-G solvation = -26.976182 kcal Electronic energy + Delta-G solvation = -12170.881179 eV Core-core repulsion = 9920.237209 eV Total energy + Delta-G solvation = -2250.643970 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.069 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.45373 -37.59715 -37.43897 -35.32910 -33.20269 -31.44640 -27.63364 -26.69330 -24.27431 -22.30592 -19.41804 -19.05502 -18.07492 -17.10272 -16.26890 -16.19169 -15.04465 -14.68184 -14.33582 -14.06149 -13.91162 -13.80596 -13.51696 -13.24578 -12.88837 -12.79485 -12.42767 -12.33685 -11.90967 -11.64918 -11.11997 -10.93567 -9.46482 -9.15582 -8.68665 -6.35220 0.21250 0.85822 1.43716 1.48009 1.58319 1.70999 2.12718 2.22630 2.72268 3.15642 3.51584 3.73005 4.31784 4.64212 4.84998 4.96409 5.01652 5.14937 5.24466 5.32275 5.38634 5.66701 5.89070 5.98007 6.14420 6.44018 6.58389 6.80717 6.86492 7.16526 8.28534 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.035330 B = 0.011282 C = 0.008783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.346990 B = 2481.323884 C = 3187.316192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.079 4.079 3 C -0.187 4.187 4 C 0.078 3.922 5 C -0.481 4.481 6 H 0.092 0.908 7 C 0.034 3.966 8 N -0.826 5.826 9 Si 0.981 3.019 10 H -0.262 1.262 11 H -0.274 1.274 12 H -0.253 1.253 13 C -0.127 4.127 14 C -0.053 4.053 15 C 0.293 3.707 16 N -0.482 5.482 17 C 0.016 3.984 18 O -0.498 6.498 19 H 0.081 0.919 20 H 0.071 0.929 21 H 0.067 0.933 22 H 0.122 0.878 23 H 0.289 0.711 24 H 0.110 0.890 25 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.649 2.831 -3.497 7.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.080 4.080 3 C -0.207 4.207 4 C 0.075 3.925 5 C -0.509 4.509 6 H 0.110 0.890 7 C -0.181 4.181 8 N -0.451 5.451 9 Si 0.802 3.198 10 H -0.186 1.186 11 H -0.199 1.199 12 H -0.177 1.177 13 C -0.150 4.150 14 C -0.057 4.057 15 C -0.020 4.020 16 N -0.159 5.159 17 C -0.032 4.032 18 O -0.308 6.308 19 H 0.099 0.901 20 H 0.090 0.910 21 H 0.086 0.914 22 H 0.140 0.860 23 H 0.100 0.900 24 H 0.128 0.872 25 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -4.553 1.284 -2.736 5.465 hybrid contribution 0.677 0.667 -0.376 1.022 sum -3.876 1.951 -3.112 5.340 Atomic orbital electron populations 1.20636 0.89148 1.02855 1.02848 1.19705 0.97257 0.91328 0.99669 1.20962 0.93371 0.97045 1.09330 1.17808 0.92217 0.92912 0.89539 1.19865 0.99298 0.96144 1.35641 0.88995 1.26799 0.99359 1.00200 0.91756 1.69867 1.18715 1.34075 1.22461 0.85193 0.76765 0.77598 0.80220 1.18621 1.19918 1.17656 1.21239 0.99225 0.90119 1.04384 1.16535 0.92328 0.86369 1.10463 1.26095 0.91738 0.92514 0.91682 1.81022 1.10640 1.12277 1.11980 1.17753 0.86497 0.85528 1.13399 1.84689 1.75509 1.36731 1.33875 0.90077 0.91005 0.91419 0.86016 0.89986 0.87202 0.75926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.76 9.77 71.24 0.70 -2.07 15 2 C -0.08 -2.99 5.85 -20.08 -0.12 -3.11 15 3 C -0.19 -7.82 9.34 22.50 0.21 -7.61 15 4 C 0.08 3.75 5.56 -21.32 -0.12 3.63 15 5 C -0.48 -23.07 9.04 23.41 0.21 -22.86 15 6 H 0.09 4.11 7.90 -2.91 -0.02 4.09 15 7 C 0.03 1.60 5.14 85.23 0.44 2.03 15 8 N -0.83 -41.01 10.96 21.82 0.24 -40.77 15 9 Si 0.98 35.31 29.59 68.60 2.03 37.34 15 10 H -0.26 -9.08 7.11 99.48 0.71 -8.37 15 11 H -0.27 -9.73 7.11 99.48 0.71 -9.03 15 12 H -0.25 -8.78 7.11 99.48 0.71 -8.07 15 13 C -0.13 -6.25 8.39 23.01 0.19 -6.06 15 14 C -0.05 -2.38 5.74 -21.25 -0.12 -2.51 15 15 C 0.29 13.23 14.86 88.33 1.31 14.54 15 16 N -0.48 -22.03 18.54 19.00 0.35 -21.67 15 17 C 0.02 0.65 6.70 23.09 0.15 0.81 15 18 O -0.50 -17.51 11.92 -88.00 -1.05 -18.56 15 19 H 0.08 1.92 8.14 -2.39 -0.02 1.90 15 20 H 0.07 1.84 8.07 -2.39 -0.02 1.82 15 21 H 0.07 1.85 7.50 -2.39 -0.02 1.84 15 22 H 0.12 4.58 8.06 -2.91 -0.02 4.56 15 23 H 0.29 13.19 8.30 -92.71 -0.77 12.42 15 24 H 0.11 5.77 6.19 -2.91 -0.02 5.76 15 25 H 0.39 9.90 9.06 -74.06 -0.67 9.23 15 Total: -1.00 -55.72 235.95 4.99 -50.73 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.56 Total: 16.13 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 2.86 Total: -23.20 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: 0.59 Total: -62.44 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -1.05 Total: -18.56 kcal Atomic # 14 Polarization: 35.31 SS G_CDS: 2.03 Total: 37.34 kcal Total: -55.72 4.99 -50.73 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258044430.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.755 kcal (2) G-P(sol) polarization free energy of solvation -55.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds