Wall clock time and date at job start Mon Mar 30 2020 02:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30781 * 1 3 3 Si 1.86800 * 120.00214 * 2 1 4 4 H 1.48501 * 109.47084 * 89.99670 * 3 2 1 5 5 H 1.48494 * 109.47416 * 209.99741 * 3 2 1 6 6 H 1.48497 * 109.46878 * 329.99976 * 3 2 1 7 7 C 1.40104 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99817 * 12.07672 * 7 2 1 9 9 C 1.39560 * 120.00092 * 192.08068 * 7 2 1 10 10 N 1.33180 * 125.70307 * 7.97617 * 9 7 2 11 11 C 1.32260 * 109.71405 * 179.82280 * 10 9 7 12 12 C 1.39052 * 108.31568 * 0.44216 * 11 10 9 13 13 C 1.47132 * 126.69211 * 179.71115 * 12 11 10 14 14 C 1.46635 * 127.00252 * 0.02562 * 13 12 11 15 15 C 1.34468 * 106.59047 * 179.97438 * 14 13 12 16 16 N 1.36451 * 109.19703 * 359.97438 * 15 14 13 17 17 H 0.97000 * 124.90119 * 180.02562 * 16 15 14 18 18 C 1.35636 * 110.19808 * 359.75072 * 16 15 14 19 19 N 1.37582 * 106.61143 * 359.73162 * 12 11 10 20 20 H 0.97003 * 126.62439 * 179.97438 * 19 12 11 21 21 H 0.96999 * 119.99988 * 174.71746 * 1 2 3 22 22 H 1.07998 * 125.84044 * 180.15189 * 11 10 9 23 23 H 1.08002 * 126.70393 * 359.97438 * 14 13 12 24 24 H 1.08006 * 125.40495 * 180.02562 * 15 14 13 25 25 H 1.07999 * 125.99618 * 180.25740 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.4893 2.0464 1.4001 5 1 3.5394 1.4401 -0.6999 6 1 1.4393 2.6526 -0.7000 7 6 2.0084 -1.2133 0.0005 8 1 1.4863 -2.1384 -0.1947 9 6 3.3808 -1.2265 0.2535 10 7 4.1076 -0.1844 0.6527 11 6 5.3699 -0.5509 0.7998 12 6 5.4749 -1.8979 0.4710 13 6 6.6990 -2.7141 0.4880 14 6 8.0487 -2.2732 0.8541 15 6 8.8505 -3.3451 0.7267 16 7 8.1093 -4.4132 0.3125 17 1 8.4605 -5.3024 0.1487 18 6 6.8093 -4.0536 0.1689 19 7 4.2111 -2.3183 0.1262 20 1 3.9544 -3.2111 -0.1531 21 1 -0.4850 -0.8365 -0.0773 22 1 6.1811 0.0880 1.1163 23 1 8.3416 -1.2813 1.1654 24 1 9.9127 -3.3587 0.9220 25 1 6.0026 -4.7004 -0.1431 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259099503.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:42 Heat of formation + Delta-G solvation = 77.718640 kcal Electronic energy + Delta-G solvation = -12105.983133 eV Core-core repulsion = 9892.171822 eV Total energy + Delta-G solvation = -2213.811311 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.40801 -39.63207 -33.55430 -31.41233 -30.74373 -29.06223 -27.87582 -24.48754 -20.94974 -20.50871 -19.64092 -19.07627 -18.34170 -17.12571 -15.61494 -13.91749 -13.69215 -13.49068 -13.26752 -13.15231 -12.85199 -12.73280 -11.88403 -11.72232 -11.43861 -10.73511 -10.23507 -9.62674 -9.09412 -8.83913 -8.43954 -8.06678 -7.88969 -7.22231 -6.74331 -4.42648 2.39673 2.86998 3.60612 3.64347 3.70129 4.08548 4.14894 4.50260 4.56206 4.58825 5.32203 5.40087 5.46768 5.79070 6.10123 6.19481 6.38015 6.52456 6.81458 7.22584 7.39842 7.44990 7.60390 7.78681 7.92833 8.03782 8.37601 8.74903 9.07890 9.67720 10.20216 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.074647 B = 0.008527 C = 0.007724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.007810 B = 3282.745826 C = 3624.331827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.063 3.937 3 Si 1.124 2.876 4 H -0.283 1.283 5 H -0.262 1.262 6 H -0.323 1.323 7 C -0.510 4.510 8 H 0.076 0.924 9 C 0.378 3.622 10 N -0.587 5.587 11 C 0.038 3.962 12 C -0.074 4.074 13 C -0.045 4.045 14 C -0.194 4.194 15 C -0.019 4.019 16 N -0.566 5.566 17 H 0.406 0.594 18 C -0.058 4.058 19 N -0.615 5.615 20 H 0.399 0.601 21 H 0.280 0.720 22 H 0.146 0.854 23 H 0.137 0.863 24 H 0.158 0.842 25 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.457 -6.824 -0.118 14.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.157 4.157 3 Si 0.954 3.046 4 H -0.210 1.210 5 H -0.187 1.187 6 H -0.255 1.255 7 C -0.550 4.550 8 H 0.094 0.906 9 C 0.136 3.864 10 N -0.313 5.313 11 C -0.116 4.116 12 C -0.185 4.185 13 C -0.053 4.053 14 C -0.220 4.220 15 C -0.148 4.148 16 N -0.162 5.162 17 H 0.241 0.759 18 C -0.187 4.187 19 N -0.223 5.223 20 H 0.234 0.766 21 H 0.091 0.909 22 H 0.163 0.837 23 H 0.155 0.845 24 H 0.175 0.825 25 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 11.984 -4.584 0.092 12.831 hybrid contribution 0.438 -3.671 -0.350 3.714 sum 12.422 -8.255 -0.258 14.917 Atomic orbital electron populations 1.70656 1.07837 1.32419 1.33740 1.27317 0.95120 1.04921 0.88381 0.82577 0.73465 0.70103 0.78464 1.20996 1.18729 1.25487 1.19297 0.89611 0.97191 1.48908 0.90560 1.20144 0.91796 0.80598 0.93839 1.69658 1.03884 1.27373 1.30358 1.22201 0.94535 0.91437 1.03400 1.18605 0.83844 0.94894 1.21197 1.18739 0.91163 0.91107 1.04285 1.21766 0.91763 0.98505 1.09982 1.21533 0.97001 0.87644 1.08654 1.41452 1.07668 1.11217 1.55859 0.75892 1.21914 0.86178 0.96584 1.14068 1.43083 1.07133 1.11999 1.60078 0.76629 0.90917 0.83678 0.84522 0.82508 0.82938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.04 13.65 55.56 0.76 -22.28 15 2 C 0.06 1.77 5.52 -17.30 -0.10 1.67 15 3 Si 1.12 28.52 26.33 -169.99 -4.48 24.05 15 4 H -0.28 -7.22 7.11 56.52 0.40 -6.82 15 5 H -0.26 -6.75 6.29 56.52 0.36 -6.40 15 6 H -0.32 -7.97 7.11 56.52 0.40 -7.57 15 7 C -0.51 -14.16 9.84 -38.39 -0.38 -14.53 15 8 H 0.08 2.08 8.06 -52.49 -0.42 1.66 15 9 C 0.38 10.11 7.27 -155.39 -1.13 8.98 15 10 N -0.59 -15.77 6.34 -12.15 -0.08 -15.84 15 11 C 0.04 0.91 11.76 -17.07 -0.20 0.71 15 12 C -0.07 -1.66 7.18 -81.37 -0.58 -2.25 15 13 C -0.04 -0.85 6.33 -102.94 -0.65 -1.50 15 14 C -0.19 -3.12 10.95 -37.53 -0.41 -3.53 15 15 C -0.02 -0.24 11.86 -16.83 -0.20 -0.44 15 16 N -0.57 -7.03 5.95 -12.29 -0.07 -7.10 15 17 H 0.41 3.47 8.96 -40.82 -0.37 3.10 15 18 C -0.06 -0.91 12.00 -15.90 -0.19 -1.10 15 19 N -0.62 -14.26 6.32 -8.37 -0.05 -14.31 15 20 H 0.40 8.01 8.96 -40.82 -0.37 7.64 15 21 H 0.28 7.51 8.73 -40.82 -0.36 7.15 15 22 H 0.15 3.00 8.06 -52.49 -0.42 2.57 15 23 H 0.14 2.02 8.06 -52.49 -0.42 1.59 15 24 H 0.16 1.43 8.06 -52.48 -0.42 1.01 15 25 H 0.15 2.12 8.06 -52.49 -0.42 1.70 15 LS Contribution 228.76 15.07 3.45 3.45 Total: -1.00 -32.03 228.76 -6.36 -38.39 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -2.04 Total: 5.65 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -3.84 Total: -11.99 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 0.56 Total: -59.54 kcal Atomic # 14 Polarization: 28.52 SS G_CDS: -4.48 Total: 24.05 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -32.03 -6.36 -38.39 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259099503.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.105 kcal (2) G-P(sol) polarization free energy of solvation -32.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds