Wall clock time and date at job start Mon Mar 30 2020 02:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99921 * 2 1 4 4 H 1.48500 * 109.46995 * 274.99432 * 3 2 1 5 5 H 1.48500 * 109.47261 * 34.99207 * 3 2 1 6 6 H 1.48495 * 109.47216 * 154.99199 * 3 2 1 7 7 C 1.37874 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00498 * 160.85715 * 7 2 1 9 9 C 1.50706 * 119.99780 * 340.85567 * 7 2 1 10 10 C 1.53000 * 115.54960 * 324.77017 * 9 7 2 11 11 C 1.50700 * 109.47202 * 279.18929 * 10 9 7 12 12 C 1.38224 * 119.61905 * 123.34900 * 11 10 9 13 13 C 1.38630 * 119.15776 * 179.97438 * 12 11 10 14 14 C 1.38675 * 118.42198 * 359.97438 * 13 12 11 15 15 C 1.38180 * 119.16426 * 0.27907 * 14 13 12 16 16 N 1.31854 * 119.61407 * 303.32769 * 11 10 9 17 17 C 1.52999 * 117.51731 * 110.46816 * 9 7 2 18 18 C 1.52994 * 117.49658 * 179.09975 * 9 7 2 19 19 H 0.97007 * 120.00274 * 5.02002 * 1 2 3 20 20 H 1.08996 * 109.46797 * 159.18584 * 10 9 7 21 21 H 1.09003 * 109.47303 * 39.18995 * 10 9 7 22 22 H 1.08000 * 120.42232 * 0.02562 * 12 11 10 23 23 H 1.08000 * 120.78842 * 180.02562 * 13 12 11 24 24 H 1.07999 * 120.41245 * 180.02562 * 14 13 12 25 25 H 1.07998 * 119.61529 * 179.70141 * 15 14 13 26 26 H 1.08999 * 117.50301 * 214.96918 * 17 9 7 27 27 H 1.09005 * 117.49968 * 359.97438 * 17 9 7 28 28 H 1.08997 * 117.50313 * 359.97438 * 18 9 7 29 29 H 1.09003 * 117.50074 * 145.00048 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3910 2.1074 -1.3948 5 1 1.5033 2.6199 0.8029 6 1 3.5954 1.4121 0.5918 7 6 2.0045 -1.1940 -0.0005 8 1 3.0397 -1.2198 -0.3072 9 6 1.3135 -2.4632 0.4269 10 6 0.2876 -2.3095 1.5515 11 6 1.0000 -2.2645 2.8787 12 6 0.8137 -1.1820 3.7178 13 6 1.4734 -1.1508 4.9367 14 6 2.2991 -2.2147 5.2678 15 6 2.4405 -3.2603 4.3756 16 7 1.7936 -3.2586 3.2262 17 6 1.0279 -3.5103 -0.6515 18 6 2.1262 -3.7588 0.3843 19 1 -0.4851 0.8369 -0.0735 20 1 -0.3984 -3.1563 1.5358 21 1 -0.2727 -1.3854 1.4085 22 1 0.1618 -0.3712 3.4279 23 1 1.3466 -0.3182 5.6128 24 1 2.8281 -2.2237 6.2093 25 1 3.0855 -4.0902 4.6239 26 1 0.1092 -4.0896 -0.5598 27 1 1.3394 -3.2811 -1.6706 28 1 3.1605 -3.6933 0.0468 29 1 1.9300 -4.5017 1.1575 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259485085.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:16 Heat of formation + Delta-G solvation = 57.043699 kcal Electronic energy + Delta-G solvation = -12866.332660 eV Core-core repulsion = 10755.165160 eV Total energy + Delta-G solvation = -2111.167500 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.49814 -36.41809 -32.19831 -31.81021 -31.28582 -26.66575 -25.38823 -22.83714 -21.59275 -20.85651 -18.92325 -16.35726 -15.99239 -15.33959 -14.69120 -14.60365 -13.62830 -13.53008 -12.80060 -12.51623 -12.34683 -11.62891 -11.20765 -10.99411 -10.93261 -10.54931 -10.29552 -10.03746 -9.51062 -9.21597 -9.09380 -8.65184 -8.43115 -8.14348 -7.87632 -6.06446 -4.02992 1.81025 1.92344 3.24727 3.33346 3.40361 4.37426 4.49715 4.99392 5.09205 5.30485 5.43902 5.63110 5.80845 5.82751 6.25546 6.32123 6.38614 6.55237 6.69463 6.74436 6.83010 6.98432 7.06553 7.17410 7.35227 7.42612 7.58051 7.69199 8.09483 8.51114 8.79594 8.90945 9.52648 10.95524 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.027387 B = 0.014916 C = 0.011320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.140456 B = 1876.776073 C = 2472.896349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.072 3.928 3 Si 0.881 3.119 4 H -0.281 1.281 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.485 4.485 8 H 0.058 0.942 9 C 0.062 3.938 10 C -0.054 4.054 11 C 0.177 3.823 12 C -0.168 4.168 13 C -0.083 4.083 14 C -0.203 4.203 15 C 0.092 3.908 16 N -0.477 5.477 17 C -0.208 4.208 18 C -0.193 4.193 19 H 0.262 0.738 20 H 0.048 0.952 21 H 0.130 0.870 22 H 0.130 0.870 23 H 0.123 0.877 24 H 0.121 0.879 25 H 0.144 0.856 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.100 -1.953 8.056 8.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.130 4.130 3 Si 0.709 3.291 4 H -0.207 1.207 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.522 4.522 8 H 0.076 0.924 9 C 0.061 3.939 10 C -0.092 4.092 11 C 0.040 3.960 12 C -0.188 4.188 13 C -0.109 4.109 14 C -0.223 4.223 15 C -0.065 4.065 16 N -0.186 5.186 17 C -0.246 4.246 18 C -0.231 4.231 19 H 0.072 0.928 20 H 0.066 0.934 21 H 0.147 0.853 22 H 0.148 0.852 23 H 0.141 0.859 24 H 0.139 0.861 25 H 0.161 0.839 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.040 -2.510 7.551 8.025 hybrid contribution 0.525 1.636 0.553 1.805 sum 1.565 -0.874 8.105 8.301 Atomic orbital electron populations 1.69804 1.05965 1.26697 1.48910 1.24905 0.94657 0.98851 0.94539 0.86732 0.80533 0.83684 0.78182 1.20671 1.20863 1.19775 1.20585 0.97152 0.90470 1.43991 0.92362 1.18691 0.94755 0.88142 0.92328 1.20556 0.96617 1.04660 0.87353 1.21685 0.90787 0.88049 0.95457 1.22055 1.01910 1.00114 0.94732 1.21462 0.95384 0.97643 0.96382 1.21894 1.02370 0.96591 1.01406 1.22662 0.96804 0.97159 0.89896 1.67637 1.06816 1.27996 1.16172 1.23030 0.98274 1.07537 0.95742 1.22841 0.94945 1.03525 1.01753 0.92769 0.93376 0.85267 0.85186 0.85937 0.86066 0.83912 0.91976 0.90882 0.91671 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.74 10.94 55.43 0.61 -23.13 15 2 C 0.07 1.95 5.10 -17.82 -0.09 1.86 15 3 Si 0.88 20.87 29.58 -169.99 -5.03 15.84 15 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 15 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 7 C -0.48 -13.47 8.99 -34.44 -0.31 -13.78 15 8 H 0.06 1.65 7.89 -52.49 -0.41 1.24 15 9 C 0.06 1.57 1.71 -155.66 -0.27 1.31 15 10 C -0.05 -1.29 5.33 -27.88 -0.15 -1.44 15 11 C 0.18 3.89 6.15 -82.59 -0.51 3.39 15 12 C -0.17 -3.32 9.71 -39.44 -0.38 -3.70 15 13 C -0.08 -1.37 10.18 -39.28 -0.40 -1.77 15 14 C -0.20 -3.14 10.11 -39.44 -0.40 -3.54 15 15 C 0.09 1.59 11.18 -17.55 -0.20 1.40 15 16 N -0.48 -9.98 8.28 -9.47 -0.08 -10.06 15 17 C -0.21 -4.98 9.88 -26.73 -0.26 -5.25 15 18 C -0.19 -4.55 9.03 -26.73 -0.24 -4.79 15 19 H 0.26 6.72 8.32 -40.82 -0.34 6.38 15 20 H 0.05 1.10 7.94 -51.93 -0.41 0.69 15 21 H 0.13 3.29 4.98 -51.93 -0.26 3.03 15 22 H 0.13 2.51 7.95 -52.49 -0.42 2.09 15 23 H 0.12 1.63 8.06 -52.49 -0.42 1.20 15 24 H 0.12 1.46 8.06 -52.49 -0.42 1.03 15 25 H 0.14 1.99 8.06 -52.49 -0.42 1.57 15 26 H 0.06 1.39 8.08 -51.93 -0.42 0.97 15 27 H 0.07 1.76 8.14 -51.93 -0.42 1.34 15 28 H 0.06 1.53 8.14 -51.93 -0.42 1.11 15 29 H 0.08 1.89 7.17 -51.93 -0.37 1.52 15 LS Contribution 250.26 15.07 3.77 3.77 Total: -1.00 -28.72 250.26 -7.48 -36.20 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -3.54 Total: 3.68 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: -3.21 Total: -26.30 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.53 Total: -33.19 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.72 -7.48 -36.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259485085.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.245 kcal (2) G-P(sol) polarization free energy of solvation -28.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds