Wall clock time and date at job start Mon Mar 30 2020 02:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99921 * 2 1 4 4 H 1.48500 * 109.46995 * 274.99432 * 3 2 1 5 5 H 1.48500 * 109.47261 * 34.99207 * 3 2 1 6 6 H 1.48495 * 109.47216 * 154.99199 * 3 2 1 7 7 C 1.37874 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00498 * 160.85715 * 7 2 1 9 9 C 1.50706 * 119.99780 * 340.85567 * 7 2 1 10 10 C 1.53000 * 115.54960 * 324.77017 * 9 7 2 11 11 C 1.50700 * 109.47202 * 279.18929 * 10 9 7 12 12 C 1.38224 * 119.61905 * 123.34900 * 11 10 9 13 13 C 1.38630 * 119.15776 * 179.97438 * 12 11 10 14 14 C 1.38675 * 118.42198 * 359.97438 * 13 12 11 15 15 C 1.38180 * 119.16426 * 0.27907 * 14 13 12 16 16 N 1.31854 * 119.61407 * 303.32769 * 11 10 9 17 17 C 1.52999 * 117.51731 * 110.46816 * 9 7 2 18 18 C 1.52994 * 117.49658 * 179.09975 * 9 7 2 19 19 H 0.97007 * 120.00274 * 5.02002 * 1 2 3 20 20 H 1.08996 * 109.46797 * 159.18584 * 10 9 7 21 21 H 1.09003 * 109.47303 * 39.18995 * 10 9 7 22 22 H 1.08000 * 120.42232 * 0.02562 * 12 11 10 23 23 H 1.08000 * 120.78842 * 180.02562 * 13 12 11 24 24 H 1.07999 * 120.41245 * 180.02562 * 14 13 12 25 25 H 1.07998 * 119.61529 * 179.70141 * 15 14 13 26 26 H 1.08999 * 117.50301 * 214.96918 * 17 9 7 27 27 H 1.09005 * 117.49968 * 359.97438 * 17 9 7 28 28 H 1.08997 * 117.50313 * 359.97438 * 18 9 7 29 29 H 1.09003 * 117.50074 * 145.00048 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3910 2.1074 -1.3948 5 1 1.5033 2.6199 0.8029 6 1 3.5954 1.4121 0.5918 7 6 2.0045 -1.1940 -0.0005 8 1 3.0397 -1.2198 -0.3072 9 6 1.3135 -2.4632 0.4269 10 6 0.2876 -2.3095 1.5515 11 6 1.0000 -2.2645 2.8787 12 6 0.8137 -1.1820 3.7178 13 6 1.4734 -1.1508 4.9367 14 6 2.2991 -2.2147 5.2678 15 6 2.4405 -3.2603 4.3756 16 7 1.7936 -3.2586 3.2262 17 6 1.0279 -3.5103 -0.6515 18 6 2.1262 -3.7588 0.3843 19 1 -0.4851 0.8369 -0.0735 20 1 -0.3984 -3.1563 1.5358 21 1 -0.2727 -1.3854 1.4085 22 1 0.1618 -0.3712 3.4279 23 1 1.3466 -0.3182 5.6128 24 1 2.8281 -2.2237 6.2093 25 1 3.0855 -4.0902 4.6239 26 1 0.1092 -4.0896 -0.5598 27 1 1.3394 -3.2811 -1.6706 28 1 3.1605 -3.6933 0.0468 29 1 1.9300 -4.5017 1.1575 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259485085.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:16 Heat of formation + Delta-G solvation = 41.764200 kcal Electronic energy + Delta-G solvation = -12866.995229 eV Core-core repulsion = 10755.165160 eV Total energy + Delta-G solvation = -2111.830069 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.94128 -38.28065 -34.23640 -33.22669 -32.79036 -28.36096 -27.40914 -24.21517 -23.14109 -22.72646 -20.85374 -18.21166 -17.41373 -16.88146 -16.54351 -16.13063 -15.44679 -15.26090 -14.42235 -13.96863 -13.85479 -13.49759 -13.09463 -12.85292 -12.46555 -12.42780 -12.20301 -11.95360 -11.35827 -11.04155 -10.63406 -10.55071 -10.03683 -9.83373 -9.59224 -8.10364 -6.14296 0.41342 0.57092 1.36588 1.40859 1.51255 2.40433 2.96412 3.07843 3.61337 3.82315 4.11641 4.16430 4.37097 4.43216 4.47108 4.72034 4.75005 4.92934 5.00441 5.07315 5.10091 5.26556 5.37005 5.47731 5.48271 5.63502 5.67047 5.96879 6.18917 6.47407 6.82274 7.35266 7.43388 8.90734 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.027387 B = 0.014916 C = 0.011320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.140456 B = 1876.776073 C = 2472.896349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.040 3.960 3 Si 0.938 3.062 4 H -0.276 1.276 5 H -0.272 1.272 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.041 0.959 9 C 0.040 3.960 10 C -0.047 4.047 11 C 0.145 3.855 12 C -0.189 4.189 13 C -0.079 4.079 14 C -0.185 4.185 15 C 0.081 3.919 16 N -0.505 5.505 17 C -0.210 4.210 18 C -0.175 4.175 19 H 0.266 0.734 20 H 0.043 0.957 21 H 0.109 0.891 22 H 0.122 0.878 23 H 0.159 0.841 24 H 0.168 0.832 25 H 0.176 0.824 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.032 -1.538 10.055 10.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.162 4.162 3 Si 0.763 3.237 4 H -0.202 1.202 5 H -0.197 1.197 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.059 0.941 9 C 0.039 3.961 10 C -0.085 4.085 11 C 0.009 3.991 12 C -0.209 4.209 13 C -0.104 4.104 14 C -0.204 4.204 15 C -0.077 4.077 16 N -0.215 5.215 17 C -0.248 4.248 18 C -0.212 4.212 19 H 0.076 0.924 20 H 0.062 0.938 21 H 0.127 0.873 22 H 0.140 0.860 23 H 0.177 0.823 24 H 0.185 0.815 25 H 0.193 0.807 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.960 -2.098 9.543 9.965 hybrid contribution 0.268 1.468 0.002 1.492 sum 2.227 -0.630 9.545 9.822 Atomic orbital electron populations 1.69898 1.06827 1.27559 1.48604 1.25467 0.95389 1.01310 0.93989 0.85859 0.79127 0.80352 0.78328 1.20208 1.19667 1.20257 1.20721 0.96645 0.92257 1.45461 0.94090 1.18823 0.95900 0.88029 0.93354 1.20307 0.96256 1.03285 0.88654 1.21394 0.92610 0.89832 0.95310 1.22092 1.03021 0.99492 0.96267 1.21892 0.94174 0.99028 0.95344 1.22384 1.00827 0.94851 1.02383 1.23315 0.96453 0.98857 0.89048 1.67512 1.07521 1.28143 1.18277 1.23040 0.99089 1.07439 0.95237 1.22737 0.94389 1.02693 1.01386 0.92386 0.93813 0.87281 0.86011 0.82302 0.81483 0.80675 0.90745 0.91682 0.92089 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.91 10.94 21.45 0.23 -48.68 15 2 C 0.04 2.15 5.10 84.65 0.43 2.58 15 3 Si 0.94 42.89 29.58 68.60 2.03 44.92 15 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 5 H -0.27 -11.84 7.11 99.48 0.71 -11.14 15 6 H -0.28 -12.80 7.11 99.48 0.71 -12.10 15 7 C -0.51 -29.13 8.99 25.60 0.23 -28.90 15 8 H 0.04 2.39 7.89 -2.91 -0.02 2.36 15 9 C 0.04 2.07 1.71 -52.93 -0.09 1.98 15 10 C -0.05 -2.31 5.33 29.85 0.16 -2.15 15 11 C 0.14 6.38 6.15 42.55 0.26 6.64 15 12 C -0.19 -7.32 9.71 22.36 0.22 -7.11 15 13 C -0.08 -2.34 10.18 22.47 0.23 -2.11 15 14 C -0.19 -4.94 10.11 22.36 0.23 -4.72 15 15 C 0.08 2.55 11.18 84.67 0.95 3.50 15 16 N -0.50 -20.64 8.28 -183.89 -1.52 -22.16 15 17 C -0.21 -10.23 9.88 30.60 0.30 -9.93 15 18 C -0.17 -8.28 9.03 30.59 0.28 -8.00 15 19 H 0.27 13.73 8.32 -92.70 -0.77 12.95 15 20 H 0.04 2.07 7.94 -2.39 -0.02 2.05 15 21 H 0.11 5.75 4.98 -2.39 -0.01 5.74 15 22 H 0.12 4.76 7.95 -2.91 -0.02 4.74 15 23 H 0.16 3.51 8.06 -2.91 -0.02 3.48 15 24 H 0.17 2.95 8.06 -2.91 -0.02 2.92 15 25 H 0.18 4.21 8.06 -2.91 -0.02 4.19 15 26 H 0.07 3.37 8.08 -2.39 -0.02 3.35 15 27 H 0.06 3.21 8.14 -2.38 -0.02 3.19 15 28 H 0.06 2.89 8.14 -2.39 -0.02 2.87 15 29 H 0.09 4.20 7.17 -2.39 -0.02 4.18 15 Total: -1.00 -62.09 250.26 5.06 -57.03 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 1.13 Total: 17.12 kcal Atomic # 6 Polarization: -51.42 SS G_CDS: 3.19 Total: -48.23 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -1.29 Total: -70.84 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -62.09 5.06 -57.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259485085.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.792 kcal (2) G-P(sol) polarization free energy of solvation -62.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds