Wall clock time and date at job start Mon Mar 30 2020 02:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34696 * 124.03283 * 2 1 4 4 C 1.36953 * 106.97235 * 179.97438 * 3 2 1 5 5 C 1.47707 * 104.66189 * 0.02562 * 4 3 2 6 6 C 1.40852 * 117.29466 * 180.02562 * 5 4 3 7 7 C 1.37925 * 119.46718 * 359.97438 * 6 5 4 8 8 N 1.31558 * 123.57756 * 359.69678 * 7 6 5 9 9 C 1.33777 * 123.03864 * 0.61124 * 8 7 6 10 10 C 1.40081 * 120.61385 * 179.70277 * 9 8 7 11 11 H 1.07999 * 120.00258 * 179.72209 * 10 9 8 12 12 C 1.40245 * 119.99861 * 359.72613 * 10 9 8 13 13 N 1.30649 * 119.99905 * 359.72379 * 12 10 9 14 14 Si 1.86800 * 120.00356 * 179.97438 * 12 10 9 15 15 H 1.48491 * 109.47216 * 89.99846 * 14 12 10 16 16 H 1.48501 * 109.47084 * 210.00428 * 14 12 10 17 17 H 1.48507 * 109.46786 * 330.00141 * 14 12 10 18 18 N 1.28633 * 124.03089 * 180.02562 * 2 1 3 19 19 H 1.09005 * 109.47379 * 89.99823 * 1 2 3 20 20 H 1.09002 * 109.47075 * 209.99777 * 1 2 3 21 21 H 1.08995 * 109.47460 * 329.99884 * 1 2 3 22 22 H 1.08007 * 126.50899 * 359.96449 * 3 2 1 23 23 H 1.07994 * 120.26529 * 180.02562 * 6 5 4 24 24 H 1.08003 * 118.21027 * 180.02562 * 7 6 5 25 25 H 0.97000 * 119.99660 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2188 1.1162 0.0000 4 6 3.5281 0.7145 0.0006 5 6 3.4663 -0.7613 0.0003 6 6 4.6898 -1.4590 0.0013 7 6 5.8741 -0.7520 0.0020 8 7 5.9369 0.5621 -0.0040 9 6 4.8516 1.3442 0.0005 10 6 4.9777 2.7393 -0.0001 11 1 4.0949 3.3614 -0.0010 12 6 6.2505 3.3284 0.0003 13 7 7.3185 2.5759 0.0068 14 14 6.4188 5.1888 -0.0012 15 1 6.4623 5.6830 1.3984 16 1 7.6715 5.5719 -0.7007 17 1 5.2563 5.7903 -0.7027 18 7 2.1849 -1.0660 -0.0005 19 1 -0.3634 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8899 0.5138 22 1 1.8590 2.1346 -0.0005 23 1 4.7006 -2.5389 0.0008 24 1 6.8003 -1.3074 0.0024 25 1 8.1988 2.9833 0.0074 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259486681.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:54 Heat of formation + Delta-G solvation = 102.985173 kcal Electronic energy + Delta-G solvation = -12365.332438 eV Core-core repulsion = 10152.616766 eV Total energy + Delta-G solvation = -2212.715672 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.08619 -36.69354 -33.78042 -31.93589 -30.54854 -28.49573 -27.27778 -25.23029 -22.01827 -21.22988 -19.42663 -17.41842 -16.40584 -15.75736 -15.21727 -15.09815 -13.84749 -13.41773 -13.12967 -12.55287 -12.46771 -11.97501 -11.58727 -11.41299 -11.11043 -10.96958 -10.56600 -10.18072 -9.53489 -9.15008 -8.78062 -7.67293 -7.51135 -6.77581 -6.53428 -4.58807 2.11921 2.94932 2.98207 3.01528 3.43360 3.45409 3.77989 3.81181 4.70301 5.03047 5.41019 5.56491 5.60890 5.89786 5.92462 6.33548 6.53567 6.68980 6.79290 6.94478 7.13300 7.50992 7.80463 7.89294 8.04395 8.29003 8.42426 8.83383 9.32558 10.01369 10.39945 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.040736 B = 0.011333 C = 0.008909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.193514 B = 2470.164529 C = 3142.211599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.303 5.303 3 C 0.011 3.989 4 C -0.247 4.247 5 C 0.133 3.867 6 C -0.346 4.346 7 C 0.173 3.827 8 N -0.555 5.555 9 C 0.310 3.690 10 C -0.380 4.380 11 H 0.088 0.912 12 C 0.060 3.940 13 N -0.678 5.678 14 Si 0.914 3.086 15 H -0.266 1.266 16 H -0.273 1.273 17 H -0.259 1.259 18 N -0.372 5.372 19 H 0.069 0.931 20 H 0.084 0.916 21 H 0.083 0.917 22 H 0.168 0.832 23 H 0.092 0.908 24 H 0.114 0.886 25 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.471 3.231 0.071 7.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.084 5.084 3 C -0.139 4.139 4 C -0.259 4.259 5 C -0.018 4.018 6 C -0.376 4.376 7 C 0.015 3.985 8 N -0.272 5.272 9 C 0.178 3.822 10 C -0.412 4.412 11 H 0.107 0.893 12 C -0.170 4.170 13 N -0.298 5.298 14 Si 0.737 3.263 15 H -0.191 1.191 16 H -0.197 1.197 17 H -0.183 1.183 18 N -0.204 5.204 19 H 0.088 0.912 20 H 0.103 0.897 21 H 0.101 0.899 22 H 0.185 0.815 23 H 0.110 0.890 24 H 0.132 0.868 25 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.407 2.597 0.064 6.914 hybrid contribution -0.339 0.938 -0.010 0.997 sum -6.745 3.535 0.054 7.616 Atomic orbital electron populations 1.21805 0.75635 1.03950 1.02922 1.45001 1.06551 1.03088 1.53742 1.22227 0.91160 0.92208 1.08297 1.21866 0.94348 0.95385 1.14328 1.20488 0.90651 0.92396 0.98315 1.19894 0.89456 0.97350 1.30907 1.21912 0.94670 0.91643 0.90263 1.68571 1.28252 1.03075 1.27347 1.19040 0.83132 0.92979 0.87064 1.19635 0.93489 0.90765 1.37341 0.89345 1.26243 0.95578 1.00942 0.94222 1.70131 0.98910 1.37114 1.23603 0.86214 0.79216 0.81366 0.79530 1.19074 1.19745 1.18256 1.73244 1.03512 1.10907 1.32739 0.91207 0.89726 0.89865 0.81458 0.88963 0.86802 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.30 11.24 59.85 0.67 1.98 15 2 N -0.30 -6.20 3.67 -67.79 -0.25 -6.45 15 3 C 0.01 0.23 11.47 -16.76 -0.19 0.04 15 4 C -0.25 -6.42 6.43 -103.14 -0.66 -7.08 15 5 C 0.13 3.55 7.62 -83.06 -0.63 2.92 15 6 C -0.35 -9.03 10.17 -38.71 -0.39 -9.43 15 7 C 0.17 4.53 11.02 -17.78 -0.20 4.34 15 8 N -0.55 -15.74 7.84 -10.01 -0.08 -15.82 15 9 C 0.31 8.57 6.72 -82.97 -0.56 8.01 15 10 C -0.38 -9.68 9.16 -38.14 -0.35 -10.03 15 11 H 0.09 2.02 7.85 -52.49 -0.41 1.61 15 12 C 0.06 1.43 5.50 -17.30 -0.10 1.34 15 13 N -0.68 -17.26 11.49 55.56 0.64 -16.62 15 14 Si 0.91 17.15 29.56 -169.99 -5.03 12.13 15 15 H -0.27 -4.93 7.11 56.52 0.40 -4.53 15 16 H -0.27 -5.02 7.11 56.52 0.40 -4.62 15 17 H -0.26 -4.73 7.11 56.52 0.40 -4.33 15 18 N -0.37 -9.08 11.91 33.27 0.40 -8.69 15 19 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 20 H 0.08 1.04 8.14 -51.93 -0.42 0.61 15 21 H 0.08 0.83 8.12 -51.93 -0.42 0.41 15 22 H 0.17 2.87 8.06 -52.48 -0.42 2.45 15 23 H 0.09 2.23 8.06 -52.49 -0.42 1.81 15 24 H 0.11 2.64 8.06 -52.48 -0.42 2.22 15 25 H 0.28 6.31 8.29 -40.82 -0.34 5.97 15 LS Contribution 229.83 15.07 3.46 3.46 Total: -1.00 -32.56 229.83 -5.34 -37.91 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -2.08 Total: 1.99 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -2.41 Total: -7.91 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 0.71 Total: -47.58 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.13 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -32.56 -5.34 -37.91 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259486681.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.892 kcal (2) G-P(sol) polarization free energy of solvation -32.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds