Wall clock time and date at job start Mon Mar 30 2020 02:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31501 * 1 3 3 Si 1.86809 * 120.00153 * 2 1 4 4 H 1.48499 * 109.46888 * 270.00017 * 3 2 1 5 5 H 1.48500 * 109.47070 * 30.00096 * 3 2 1 6 6 H 1.48500 * 109.46836 * 150.00109 * 3 2 1 7 7 C 1.37877 * 120.00269 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00701 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99571 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.46938 * 179.97438 * 9 7 2 11 11 C 1.38622 * 120.22107 * 89.99919 * 10 9 7 12 12 N 1.31682 * 121.35729 * 180.02562 * 11 10 9 13 13 C 1.32351 * 121.57993 * 0.02562 * 12 11 10 14 14 N 1.37819 * 133.80557 * 179.97438 * 13 12 11 15 15 H 0.97000 * 126.27620 * 0.02562 * 14 13 12 16 16 C 1.36125 * 107.44992 * 180.02562 * 14 13 12 17 17 N 1.30102 * 110.07981 * 0.02562 * 16 14 13 18 18 C 1.35671 * 109.50419 * 0.02562 * 17 16 14 19 19 C 1.38169 * 120.22526 * 270.02340 * 10 9 7 20 20 H 0.97004 * 120.00121 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47096 * 59.99954 * 9 7 2 22 22 H 1.08995 * 109.47067 * 299.99647 * 9 7 2 23 23 H 1.07995 * 119.31908 * 359.97438 * 11 10 9 24 24 H 1.07996 * 124.95991 * 179.73636 * 16 14 13 25 25 H 1.07995 * 120.91840 * 359.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0005 11 6 2.6836 -4.1749 1.1984 12 7 3.5395 -5.1753 1.2245 13 6 4.0052 -5.7183 0.1109 14 7 4.8849 -6.7456 -0.1542 15 1 5.3486 -7.2880 0.5028 16 6 4.9839 -6.8594 -1.5070 17 7 4.2270 -5.9738 -2.0863 18 6 3.5930 -5.2330 -1.1429 19 6 2.6826 -4.1730 -1.1933 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.3282 -3.7585 2.1293 24 1 5.6040 -7.5767 -2.0240 25 1 2.3438 -3.7768 -2.1392 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259532941.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:01 Heat of formation + Delta-G solvation = 73.276604 kcal Electronic energy + Delta-G solvation = -12071.345392 eV Core-core repulsion = 9857.341460 eV Total energy + Delta-G solvation = -2214.003932 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.87338 -37.98274 -33.82589 -32.88994 -31.26725 -29.58554 -27.03056 -23.76642 -23.27543 -21.55240 -20.51758 -18.18300 -16.83970 -16.35569 -15.58583 -15.21520 -14.62067 -14.00899 -13.43253 -12.57566 -12.49512 -12.11555 -11.76335 -11.31455 -10.91452 -10.68677 -10.59687 -10.51564 -9.83996 -9.49436 -8.69919 -8.43611 -8.17706 -7.85103 -6.07216 -4.11589 1.27363 1.93073 2.87754 3.11500 3.30420 3.36790 3.40910 4.33820 4.44085 4.49780 4.81660 5.20369 5.28119 5.50619 5.72439 5.77752 6.25426 6.35839 6.69429 6.82240 7.23274 7.40413 7.48892 7.63694 7.87970 8.02253 8.25753 8.38079 8.93124 9.52936 11.02456 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.058893 B = 0.007794 C = 0.007629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.323321 B = 3591.681861 C = 3669.352800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.057 3.943 10 C -0.093 4.093 11 C 0.143 3.857 12 N -0.495 5.495 13 C 0.215 3.785 14 N -0.596 5.596 15 H 0.422 0.578 16 C 0.255 3.745 17 N -0.491 5.491 18 C 0.001 3.999 19 C -0.034 4.034 20 H 0.263 0.737 21 H 0.033 0.967 22 H 0.035 0.965 23 H 0.165 0.835 24 H 0.217 0.783 25 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.573 -11.320 -0.174 13.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.019 3.981 10 C -0.098 4.098 11 C -0.023 4.023 12 N -0.209 5.209 13 C -0.019 4.019 14 N -0.213 5.213 15 H 0.260 0.740 16 C -0.032 4.032 17 N -0.211 5.211 18 C -0.118 4.118 19 C -0.061 4.061 20 H 0.073 0.927 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.182 0.818 24 H 0.233 0.767 25 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.594 -11.408 -0.309 13.708 hybrid contribution 0.637 0.815 0.342 1.089 sum 8.231 -10.593 0.033 13.415 Atomic orbital electron populations 1.69942 1.06018 1.26950 1.50180 1.24982 0.94869 0.99238 0.95006 0.86533 0.79835 0.83106 0.78231 1.20555 1.21122 1.19811 1.21049 0.93048 0.89802 1.51485 0.92479 1.18269 0.92106 0.88756 0.98965 1.21449 0.98934 0.97455 0.91948 1.22618 0.91188 0.89719 0.98765 1.66409 1.13306 1.12298 1.28845 1.18964 0.96940 0.93752 0.92284 1.42698 1.39352 1.30364 1.08848 0.73988 1.25242 0.99451 0.99357 0.79199 1.70362 1.11185 1.07410 1.32163 1.19714 1.02160 1.00164 0.89772 1.20681 0.93764 0.92140 0.99564 0.92742 0.94841 0.94663 0.81795 0.76676 0.84496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.74 13.28 55.43 0.74 -25.00 15 2 C 0.06 1.69 5.46 -17.83 -0.10 1.59 15 3 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 7 C -0.52 -14.07 9.09 -34.44 -0.31 -14.39 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 15 9 C 0.06 1.40 5.12 -29.03 -0.15 1.25 15 10 C -0.09 -2.01 5.08 -104.50 -0.53 -2.54 15 11 C 0.14 2.83 10.83 -17.47 -0.19 2.64 15 12 N -0.50 -9.53 10.38 -12.27 -0.13 -9.65 15 13 C 0.21 3.91 8.46 -155.64 -1.32 2.59 15 14 N -0.60 -7.75 6.21 -13.25 -0.08 -7.83 15 15 H 0.42 3.85 8.96 -40.82 -0.37 3.48 15 16 C 0.26 3.12 12.97 -89.71 -1.16 1.96 15 17 N -0.49 -8.47 11.28 -12.00 -0.14 -8.60 15 18 C 0.00 0.02 7.24 -84.67 -0.61 -0.60 15 19 C -0.03 -0.70 9.89 -39.01 -0.39 -1.09 15 20 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 21 H 0.03 0.87 8.09 -51.93 -0.42 0.45 15 22 H 0.04 0.89 8.09 -51.93 -0.42 0.47 15 23 H 0.16 2.94 8.06 -52.49 -0.42 2.51 15 24 H 0.22 1.34 8.06 -52.49 -0.42 0.92 15 25 H 0.14 2.76 8.06 -52.49 -0.42 2.34 15 LS Contribution 231.53 15.07 3.49 3.49 Total: -1.00 -32.35 231.53 -7.91 -40.27 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -2.02 Total: -0.34 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -4.76 Total: -8.58 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 0.39 Total: -51.09 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -32.35 -7.91 -40.27 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259532941.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.545 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds