Wall clock time and date at job start Mon Mar 30 2020 02:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31501 * 1 3 3 Si 1.86809 * 120.00153 * 2 1 4 4 H 1.48499 * 109.46888 * 270.00017 * 3 2 1 5 5 H 1.48500 * 109.47070 * 30.00096 * 3 2 1 6 6 H 1.48500 * 109.46836 * 150.00109 * 3 2 1 7 7 C 1.37877 * 120.00269 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00701 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99571 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.46938 * 179.97438 * 9 7 2 11 11 C 1.38622 * 120.22107 * 89.99919 * 10 9 7 12 12 N 1.31682 * 121.35729 * 180.02562 * 11 10 9 13 13 C 1.32351 * 121.57993 * 0.02562 * 12 11 10 14 14 N 1.37819 * 133.80557 * 179.97438 * 13 12 11 15 15 H 0.97000 * 126.27620 * 0.02562 * 14 13 12 16 16 C 1.36125 * 107.44992 * 180.02562 * 14 13 12 17 17 N 1.30102 * 110.07981 * 0.02562 * 16 14 13 18 18 C 1.35671 * 109.50419 * 0.02562 * 17 16 14 19 19 C 1.38169 * 120.22526 * 270.02340 * 10 9 7 20 20 H 0.97004 * 120.00121 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47096 * 59.99954 * 9 7 2 22 22 H 1.08995 * 109.47067 * 299.99647 * 9 7 2 23 23 H 1.07995 * 119.31908 * 359.97438 * 11 10 9 24 24 H 1.07996 * 124.95991 * 179.73636 * 16 14 13 25 25 H 1.07995 * 120.91840 * 359.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0005 11 6 2.6836 -4.1749 1.1984 12 7 3.5395 -5.1753 1.2245 13 6 4.0052 -5.7183 0.1109 14 7 4.8849 -6.7456 -0.1542 15 1 5.3486 -7.2880 0.5028 16 6 4.9839 -6.8594 -1.5070 17 7 4.2270 -5.9738 -2.0863 18 6 3.5930 -5.2330 -1.1429 19 6 2.6826 -4.1730 -1.1933 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.3282 -3.7585 2.1293 24 1 5.6040 -7.5767 -2.0240 25 1 2.3438 -3.7768 -2.1392 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259532941.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:01 Heat of formation + Delta-G solvation = 52.401405 kcal Electronic energy + Delta-G solvation = -12072.250608 eV Core-core repulsion = 9857.341460 eV Total energy + Delta-G solvation = -2214.909149 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.17732 -39.44470 -35.64044 -34.45805 -32.92248 -31.04902 -28.84222 -25.48955 -24.81392 -22.95480 -21.98811 -19.49305 -18.50821 -18.15335 -17.09313 -16.54014 -16.48803 -15.36743 -14.76827 -14.47088 -14.11792 -13.80780 -13.44514 -13.22881 -12.70260 -12.50623 -12.10318 -12.03602 -11.65455 -11.46302 -10.59503 -10.16518 -9.59123 -9.38047 -8.18378 -6.30872 -0.11349 0.38104 1.42799 1.43128 1.54417 1.71927 1.90288 2.41879 2.89799 3.13168 3.26312 3.57057 3.89004 4.17032 4.27019 4.37690 4.73867 4.88623 5.14646 5.20944 5.36853 5.70783 5.74052 5.76285 6.17756 6.34244 6.79467 6.80118 6.95164 7.37603 8.90905 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.058893 B = 0.007794 C = 0.007629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.323321 B = 3591.681861 C = 3669.352800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.530 4.530 8 H 0.051 0.949 9 C 0.067 3.933 10 C -0.109 4.109 11 C 0.132 3.868 12 N -0.492 5.492 13 C 0.203 3.797 14 N -0.579 5.579 15 H 0.444 0.556 16 C 0.299 3.701 17 N -0.537 5.537 18 C -0.012 4.012 19 C -0.049 4.049 20 H 0.266 0.734 21 H 0.010 0.990 22 H 0.022 0.978 23 H 0.176 0.824 24 H 0.284 0.716 25 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.911 -12.729 -0.275 16.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.568 4.568 8 H 0.070 0.930 9 C 0.029 3.971 10 C -0.114 4.114 11 C -0.033 4.033 12 N -0.205 5.205 13 C -0.033 4.033 14 N -0.196 5.196 15 H 0.286 0.714 16 C 0.012 3.988 17 N -0.258 5.258 18 C -0.131 4.131 19 C -0.077 4.077 20 H 0.075 0.925 21 H 0.028 0.972 22 H 0.040 0.960 23 H 0.193 0.807 24 H 0.299 0.701 25 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.953 -12.847 -0.385 16.256 hybrid contribution 0.018 1.051 0.291 1.091 sum 9.971 -11.795 -0.094 15.446 Atomic orbital electron populations 1.70051 1.07477 1.27990 1.51031 1.25818 0.95703 1.02766 0.94536 0.85497 0.78652 0.78801 0.78411 1.20008 1.20342 1.19215 1.21336 0.92962 0.91213 1.51318 0.93032 1.17990 0.92318 0.89683 0.97065 1.21093 0.99562 0.97448 0.93273 1.22652 0.91860 0.90355 0.98463 1.66466 1.12948 1.11901 1.29199 1.19278 0.97683 0.94879 0.91502 1.42776 1.37994 1.28950 1.09917 0.71356 1.26613 0.96359 0.97269 0.78565 1.70391 1.13507 1.09403 1.32508 1.19805 1.01968 0.99999 0.91285 1.20648 0.94826 0.93288 0.98928 0.92479 0.97205 0.95989 0.80719 0.70127 0.85348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.65 13.28 21.45 0.28 -54.37 15 2 C 0.01 0.59 5.46 84.66 0.46 1.05 15 3 Si 0.96 43.97 29.54 68.60 2.03 46.00 15 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 15 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 7 C -0.53 -29.81 9.09 25.60 0.23 -29.58 15 8 H 0.05 2.89 7.74 -2.91 -0.02 2.87 15 9 C 0.07 3.49 5.12 29.10 0.15 3.64 15 10 C -0.11 -4.89 5.08 -19.79 -0.10 -4.99 15 11 C 0.13 5.32 10.83 84.81 0.92 6.23 15 12 N -0.49 -18.47 10.38 -192.75 -2.00 -20.47 15 13 C 0.20 7.00 8.46 133.84 1.13 8.13 15 14 N -0.58 -12.65 6.21 -195.83 -1.22 -13.86 15 15 H 0.44 5.96 8.96 -92.71 -0.83 5.12 15 16 C 0.30 5.85 12.97 180.03 2.34 8.18 15 17 N -0.54 -17.19 11.28 -191.89 -2.16 -19.36 15 18 C -0.01 -0.45 7.24 39.52 0.29 -0.17 15 19 C -0.05 -2.10 9.89 22.64 0.22 -1.88 15 20 H 0.27 14.76 8.31 -92.71 -0.77 13.99 15 21 H 0.01 0.54 8.09 -2.39 -0.02 0.52 15 22 H 0.02 1.17 8.09 -2.39 -0.02 1.15 15 23 H 0.18 6.41 8.06 -2.91 -0.02 6.38 15 24 H 0.28 1.39 8.06 -2.91 -0.02 1.37 15 25 H 0.13 5.51 8.06 -2.91 -0.02 5.48 15 Total: -1.00 -71.85 231.53 2.96 -68.89 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: 0.39 Total: 2.54 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 5.64 Total: -9.37 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -5.10 Total: -108.06 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -71.85 2.96 -68.89 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259532941.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.295 kcal (2) G-P(sol) polarization free energy of solvation -71.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds