Wall clock time and date at job start Mon Mar 30 2020 02:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34255 * 125.04782 * 2 1 4 4 C 1.38339 * 107.67090 * 180.29425 * 3 2 1 5 5 C 1.40846 * 135.98485 * 180.51805 * 4 3 2 6 6 C 1.37977 * 119.45746 * 179.57691 * 5 4 3 7 7 N 1.31532 * 123.35532 * 359.67338 * 6 5 4 8 8 C 1.33600 * 123.21468 * 0.02562 * 7 6 5 9 9 C 1.40034 * 120.54693 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00276 * 179.97438 * 9 8 7 11 11 C 1.40236 * 119.99863 * 359.97438 * 9 8 7 12 12 N 1.30655 * 119.99983 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00101 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46749 * 60.00327 * 13 11 9 15 15 H 1.48503 * 109.47061 * 180.02562 * 13 11 9 16 16 H 1.48491 * 109.47408 * 300.00548 * 13 11 9 17 17 C 1.47139 * 118.91247 * 0.02562 * 8 7 6 18 18 N 1.30987 * 135.70704 * 179.97438 * 17 8 7 19 19 H 1.09001 * 109.46715 * 90.00636 * 1 2 3 20 20 H 1.08997 * 109.47439 * 210.00426 * 1 2 3 21 21 H 1.08996 * 109.47211 * 330.01135 * 1 2 3 22 22 H 1.08002 * 126.16059 * 0.02562 * 3 2 1 23 23 H 1.07997 * 120.27263 * 359.25282 * 5 4 3 24 24 H 1.07997 * 118.32365 * 179.69719 * 6 5 4 25 25 H 0.96996 * 120.00286 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2359 1.0991 0.0000 4 6 3.5562 0.6860 -0.0068 5 6 4.8152 1.3174 -0.0014 6 6 5.9603 0.5477 -0.0031 7 7 5.9476 -0.7676 -0.0034 8 6 4.8229 -1.4886 -0.0026 9 6 4.8747 -2.8880 -0.0024 10 1 3.9600 -3.4622 -0.0013 11 6 6.1142 -3.5438 -0.0037 12 7 7.2208 -2.8491 -0.0046 13 14 6.1833 -5.4105 -0.0028 14 1 5.5005 -5.9317 -1.2142 15 1 7.6008 -5.8534 -0.0038 16 1 5.5036 -5.9305 1.2108 17 6 3.5289 -0.7882 -0.0018 18 7 2.2690 -1.1464 -0.0013 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3634 -0.8899 0.5139 21 1 -0.3633 0.8900 0.5136 22 1 1.8880 2.1216 0.0004 23 1 4.8837 2.3952 -0.0011 24 1 6.9159 1.0509 -0.0039 25 1 8.0782 -3.3027 -0.0051 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259595493.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:52 Heat of formation + Delta-G solvation = 81.011315 kcal Electronic energy + Delta-G solvation = -12323.415915 eV Core-core repulsion = 10109.747385 eV Total energy + Delta-G solvation = -2213.668530 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.67920 -38.37782 -35.58356 -33.55691 -32.43659 -30.10845 -28.56298 -26.98801 -23.60085 -22.85799 -21.18528 -19.45439 -17.99467 -17.29152 -16.84136 -16.24832 -15.66246 -15.27451 -14.64567 -14.11470 -13.74616 -13.54393 -13.07224 -13.05769 -12.86867 -12.52129 -12.45494 -11.97206 -11.32105 -11.03914 -10.68287 -9.63323 -9.48545 -8.62944 -8.39648 -6.38713 0.16619 1.40952 1.43111 1.52320 1.55685 1.80942 1.84454 2.20328 2.82100 3.61076 3.89570 3.99639 4.33366 4.45299 4.47354 4.61521 4.69391 4.78369 4.99450 5.14209 5.32454 5.63713 5.94621 6.06527 6.21305 6.42051 6.50925 6.70828 7.10377 8.24726 8.43369 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.040060 B = 0.011351 C = 0.008887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.786618 B = 2466.258173 C = 3149.900906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.352 5.352 3 C 0.011 3.989 4 C -0.169 4.169 5 C -0.315 4.315 6 C 0.100 3.900 7 N -0.572 5.572 8 C 0.264 3.736 9 C -0.399 4.399 10 H 0.092 0.908 11 C 0.015 3.985 12 N -0.719 5.719 13 Si 0.998 3.002 14 H -0.256 1.256 15 H -0.258 1.258 16 H -0.256 1.256 17 C -0.009 4.009 18 N -0.316 5.316 19 H 0.089 0.911 20 H 0.089 0.911 21 H 0.122 0.878 22 H 0.218 0.782 23 H 0.117 0.883 24 H 0.127 0.873 25 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.376 2.018 0.091 8.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.134 5.134 3 C -0.139 4.139 4 C -0.180 4.180 5 C -0.342 4.342 6 C -0.050 4.050 7 N -0.291 5.291 8 C 0.128 3.872 9 C -0.433 4.433 10 H 0.110 0.890 11 C -0.210 4.210 12 N -0.340 5.340 13 Si 0.816 3.184 14 H -0.180 1.180 15 H -0.182 1.182 16 H -0.180 1.180 17 C -0.170 4.170 18 N -0.144 5.144 19 H 0.107 0.893 20 H 0.107 0.893 21 H 0.140 0.860 22 H 0.234 0.766 23 H 0.135 0.865 24 H 0.144 0.856 25 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.322 0.748 0.092 8.356 hybrid contribution -0.002 0.765 -0.026 0.766 sum -8.324 1.513 0.066 8.461 Atomic orbital electron populations 1.22258 0.71601 1.06125 1.04768 1.48743 1.08235 1.02830 1.53573 1.22680 0.89068 0.93974 1.08157 1.19933 0.94849 0.92414 1.10840 1.20523 0.90609 0.98544 1.24520 1.22182 0.96916 0.90865 0.94996 1.68381 1.25908 1.06396 1.28445 1.19514 0.82409 0.93905 0.91335 1.19973 0.95126 0.90498 1.37662 0.89008 1.27216 0.93971 1.06686 0.93174 1.70192 0.99395 1.40124 1.24295 0.85028 0.79162 0.73813 0.80366 1.18048 1.18206 1.18049 1.23831 0.93351 0.95944 1.03869 1.76806 1.01985 1.07633 1.28014 0.89299 0.89255 0.85958 0.76552 0.86454 0.85601 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.03 11.39 127.77 1.46 3.49 15 2 N -0.35 -13.31 3.96 -367.54 -1.46 -14.76 15 3 C 0.01 0.40 11.53 84.35 0.97 1.37 15 4 C -0.17 -8.35 6.40 -20.19 -0.13 -8.48 15 5 C -0.32 -15.52 10.18 22.85 0.23 -15.29 15 6 C 0.10 5.36 11.03 84.68 0.93 6.30 15 7 N -0.57 -34.35 7.81 -185.19 -1.45 -35.79 15 8 C 0.26 15.87 6.74 41.65 0.28 16.15 15 9 C -0.40 -22.61 9.16 23.19 0.21 -22.40 15 10 H 0.09 4.97 7.85 -2.91 -0.02 4.95 15 11 C 0.01 0.76 5.50 85.35 0.47 1.23 15 12 N -0.72 -38.74 11.49 21.87 0.25 -38.49 15 13 Si 1.00 37.51 29.56 68.60 2.03 39.54 15 14 H -0.26 -9.33 7.11 99.48 0.71 -8.63 15 15 H -0.26 -8.94 7.11 99.48 0.71 -8.23 15 16 H -0.26 -9.33 7.11 99.48 0.71 -8.63 15 17 C -0.01 -0.48 7.50 44.04 0.33 -0.15 15 18 N -0.32 -15.71 12.48 -44.93 -0.56 -16.27 15 19 H 0.09 1.65 8.14 -2.39 -0.02 1.63 15 20 H 0.09 1.92 8.14 -2.39 -0.02 1.90 15 21 H 0.12 1.72 8.13 -2.39 -0.02 1.70 15 22 H 0.22 5.65 8.06 -2.91 -0.02 5.62 15 23 H 0.12 4.92 8.06 -2.91 -0.02 4.90 15 24 H 0.13 6.04 8.06 -2.91 -0.02 6.01 15 25 H 0.29 13.73 8.29 -92.71 -0.77 12.96 15 Total: -1.00 -74.13 230.78 4.78 -69.36 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 1.20 Total: 14.20 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 4.76 Total: -17.78 kcal Atomic # 7 Polarization: -102.11 SS G_CDS: -3.21 Total: -105.32 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Total: -74.13 4.78 -69.36 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259595493.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.370 kcal (2) G-P(sol) polarization free energy of solvation -74.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds