Wall clock time and date at job start Mon Mar 30 2020 02:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36530 * 119.75806 * 2 1 4 4 C 1.40576 * 118.55966 * 180.19657 * 3 2 1 5 5 N 1.32939 * 132.87690 * 179.86785 * 4 3 2 6 6 C 1.32188 * 110.01135 * 179.71047 * 5 4 3 7 7 C 1.40100 * 108.15697 * 0.02562 * 6 5 4 8 8 C 1.39804 * 126.90406 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00153 * 180.02562 * 8 7 6 10 10 C 1.39905 * 119.99861 * 0.02881 * 8 7 6 11 11 N 1.31009 * 120.00117 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00321 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47327 * 89.99782 * 12 10 8 14 14 H 1.48498 * 109.47311 * 210.00217 * 12 10 8 15 15 H 1.48501 * 109.46932 * 329.99947 * 12 10 8 16 16 N 1.37565 * 118.28794 * 359.56045 * 4 3 2 17 17 C 1.35714 * 119.78708 * 0.21766 * 16 4 3 18 18 N 1.30646 * 121.05477 * 0.02562 * 17 16 4 19 19 H 1.09002 * 109.47234 * 270.24957 * 1 2 3 20 20 H 1.08990 * 109.47818 * 30.25208 * 1 2 3 21 21 H 1.09004 * 109.46830 * 150.25608 * 1 2 3 22 22 H 1.08002 * 120.71822 * 359.77628 * 3 2 1 23 23 H 1.08000 * 125.92202 * 180.02562 * 6 5 4 24 24 H 0.97001 * 120.00186 * 179.97438 * 11 10 8 25 25 H 1.07991 * 119.47309 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1847 1.1853 0.0000 4 6 3.5901 1.1559 -0.0042 5 7 4.5148 2.1109 -0.0076 6 6 5.7218 1.5719 -0.0047 7 6 5.5776 0.1784 0.0004 8 6 6.6032 -0.7717 0.0042 9 1 6.3638 -1.8248 0.0076 10 6 7.9398 -0.3582 0.0038 11 7 8.2303 0.9193 -0.0007 12 14 9.3102 -1.6275 0.0096 13 1 9.6746 -1.9691 -1.3889 14 1 10.4967 -1.0717 0.7086 15 1 8.8489 -2.8508 0.7139 16 7 4.2166 -0.0689 0.0011 17 6 3.4750 -1.2055 0.0057 18 7 2.1694 -1.1583 0.0047 19 1 -0.3634 0.0045 1.0277 20 1 -0.3634 0.8876 -0.5177 21 1 -0.3633 -0.8923 -0.5099 22 1 1.6524 2.1250 -0.0036 23 1 6.6570 2.1122 -0.0059 24 1 9.1569 1.2060 -0.0007 25 1 3.9720 -2.1642 0.0103 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259601581.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:27 Heat of formation + Delta-G solvation = 76.727890 kcal Electronic energy + Delta-G solvation = -12383.894464 eV Core-core repulsion = 10170.040191 eV Total energy + Delta-G solvation = -2213.854273 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.21264 -37.32441 -33.96018 -33.07951 -30.26030 -29.67603 -27.26431 -24.48350 -23.16425 -20.97275 -20.21072 -17.98124 -16.40096 -15.74436 -15.10297 -14.79165 -14.35309 -13.70394 -13.06222 -13.04287 -12.36590 -11.89059 -11.81478 -11.53253 -11.23037 -11.20823 -10.97313 -10.41742 -9.99973 -9.47947 -9.26519 -8.64562 -7.91971 -7.06419 -6.96692 -4.41212 1.65431 2.41644 2.94944 2.96512 2.99745 3.67368 3.98982 4.07027 4.75477 4.90255 5.07813 5.32113 5.65545 5.89939 5.99591 6.03540 6.09500 6.49654 6.64102 6.81501 6.92186 7.21553 7.33089 7.73887 8.04076 8.36512 8.44539 8.60001 8.88315 9.43507 9.98461 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.063057 B = 0.009645 C = 0.008403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.936056 B = 2902.450756 C = 3331.242487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.009 3.991 3 C -0.085 4.085 4 C 0.094 3.906 5 N -0.468 5.468 6 C -0.061 4.061 7 C 0.166 3.834 8 C -0.426 4.426 9 H 0.081 0.919 10 C 0.071 3.929 11 N -0.795 5.795 12 Si 0.936 3.064 13 H -0.267 1.267 14 H -0.274 1.274 15 H -0.261 1.261 16 N -0.442 5.442 17 C 0.322 3.678 18 N -0.513 5.513 19 H 0.061 0.939 20 H 0.062 0.938 21 H 0.064 0.936 22 H 0.130 0.870 23 H 0.201 0.799 24 H 0.286 0.714 25 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.259 -3.431 0.003 4.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.109 4.109 3 C -0.108 4.108 4 C -0.140 4.140 5 N -0.187 5.187 6 C -0.216 4.216 7 C 0.054 3.946 8 C -0.461 4.461 9 H 0.099 0.901 10 C -0.148 4.148 11 N -0.421 5.421 12 Si 0.759 3.241 13 H -0.192 1.192 14 H -0.198 1.198 15 H -0.185 1.185 16 N -0.131 5.131 17 C 0.039 3.961 18 N -0.229 5.229 19 H 0.079 0.921 20 H 0.081 0.919 21 H 0.083 0.917 22 H 0.147 0.853 23 H 0.218 0.782 24 H 0.098 0.902 25 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.937 -3.008 0.004 4.955 hybrid contribution 1.325 -0.639 0.012 1.471 sum -2.613 -3.647 0.016 4.486 Atomic orbital electron populations 1.20320 0.89518 1.02009 1.01548 1.20127 0.95953 0.87842 1.07003 1.20485 0.89700 0.98784 1.01790 1.20110 0.93488 0.81257 1.19177 1.69803 1.00220 1.31073 1.17596 1.23956 0.94738 0.90380 1.12479 1.19241 0.78458 0.96156 1.00709 1.18441 0.89180 0.93474 1.45022 0.90108 1.25766 0.99855 0.96521 0.92642 1.69565 1.21491 1.15593 1.35473 0.85846 0.78789 0.80059 0.79364 1.19214 1.19843 1.18522 1.43817 1.08273 1.07480 1.53552 1.24090 0.87114 0.90602 0.94274 1.67787 1.05818 1.29201 1.20099 0.92052 0.91879 0.91652 0.85253 0.78242 0.90220 0.79905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.17 36.01 0.37 -0.77 15 2 C 0.01 0.18 6.77 -82.51 -0.56 -0.38 15 3 C -0.08 -1.84 9.78 -39.32 -0.38 -2.22 15 4 C 0.09 2.40 7.83 -155.39 -1.22 1.18 15 5 N -0.47 -12.71 11.22 -11.74 -0.13 -12.85 15 6 C -0.06 -1.66 10.84 -16.70 -0.18 -1.84 15 7 C 0.17 4.39 6.81 -83.64 -0.57 3.82 15 8 C -0.43 -10.53 9.29 -38.37 -0.36 -10.89 15 9 H 0.08 1.83 7.84 -52.49 -0.41 1.42 15 10 C 0.07 1.64 5.50 -17.28 -0.09 1.54 15 11 N -0.79 -19.11 10.31 55.55 0.57 -18.54 15 12 Si 0.94 17.31 29.56 -169.99 -5.03 12.29 15 13 H -0.27 -4.90 7.11 56.52 0.40 -4.50 15 14 H -0.27 -4.97 7.11 56.52 0.40 -4.56 15 15 H -0.26 -4.76 7.11 56.52 0.40 -4.36 15 16 N -0.44 -11.01 2.99 -61.31 -0.18 -11.19 15 17 C 0.32 6.93 12.11 -89.64 -1.09 5.84 15 18 N -0.51 -10.69 10.29 -10.41 -0.11 -10.80 15 19 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 20 H 0.06 0.81 8.08 -51.93 -0.42 0.39 15 21 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 22 H 0.13 2.45 8.06 -52.49 -0.42 2.03 15 23 H 0.20 5.46 5.72 -52.49 -0.30 5.16 15 24 H 0.29 6.19 8.30 -40.82 -0.34 5.85 15 25 H 0.18 3.31 8.06 -52.49 -0.42 2.89 15 LS Contribution 227.14 15.07 3.42 3.42 Total: -1.00 -28.67 227.14 -7.49 -36.16 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -1.96 Total: 5.22 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -4.08 Total: -3.73 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.15 Total: -53.38 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.29 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -28.67 -7.49 -36.16 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259601581.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.892 kcal (2) G-P(sol) polarization free energy of solvation -28.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds