Wall clock time and date at job start Mon Mar 30 2020 02:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36530 * 119.75806 * 2 1 4 4 C 1.40576 * 118.55966 * 180.19657 * 3 2 1 5 5 N 1.32939 * 132.87690 * 179.86785 * 4 3 2 6 6 C 1.32188 * 110.01135 * 179.71047 * 5 4 3 7 7 C 1.40100 * 108.15697 * 0.02562 * 6 5 4 8 8 C 1.39804 * 126.90406 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00153 * 180.02562 * 8 7 6 10 10 C 1.39905 * 119.99861 * 0.02881 * 8 7 6 11 11 N 1.31009 * 120.00117 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00321 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47327 * 89.99782 * 12 10 8 14 14 H 1.48498 * 109.47311 * 210.00217 * 12 10 8 15 15 H 1.48501 * 109.46932 * 329.99947 * 12 10 8 16 16 N 1.37565 * 118.28794 * 359.56045 * 4 3 2 17 17 C 1.35714 * 119.78708 * 0.21766 * 16 4 3 18 18 N 1.30646 * 121.05477 * 0.02562 * 17 16 4 19 19 H 1.09002 * 109.47234 * 270.24957 * 1 2 3 20 20 H 1.08990 * 109.47818 * 30.25208 * 1 2 3 21 21 H 1.09004 * 109.46830 * 150.25608 * 1 2 3 22 22 H 1.08002 * 120.71822 * 359.77628 * 3 2 1 23 23 H 1.08000 * 125.92202 * 180.02562 * 6 5 4 24 24 H 0.97001 * 120.00186 * 179.97438 * 11 10 8 25 25 H 1.07991 * 119.47309 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1847 1.1853 0.0000 4 6 3.5901 1.1559 -0.0042 5 7 4.5148 2.1109 -0.0076 6 6 5.7218 1.5719 -0.0047 7 6 5.5776 0.1784 0.0004 8 6 6.6032 -0.7717 0.0042 9 1 6.3638 -1.8248 0.0076 10 6 7.9398 -0.3582 0.0038 11 7 8.2303 0.9193 -0.0007 12 14 9.3102 -1.6275 0.0096 13 1 9.6746 -1.9691 -1.3889 14 1 10.4967 -1.0717 0.7086 15 1 8.8489 -2.8508 0.7139 16 7 4.2166 -0.0689 0.0011 17 6 3.4750 -1.2055 0.0057 18 7 2.1694 -1.1583 0.0047 19 1 -0.3634 0.0045 1.0277 20 1 -0.3634 0.8876 -0.5177 21 1 -0.3633 -0.8923 -0.5099 22 1 1.6524 2.1250 -0.0036 23 1 6.6570 2.1122 -0.0059 24 1 9.1569 1.2060 -0.0007 25 1 3.9720 -2.1642 0.0103 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259601581.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:26 Heat of formation + Delta-G solvation = 60.775028 kcal Electronic energy + Delta-G solvation = -12384.586232 eV Core-core repulsion = 10170.040191 eV Total energy + Delta-G solvation = -2214.546041 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.05442 -39.06328 -35.76553 -34.81488 -32.00027 -31.40127 -28.90276 -26.21301 -24.94409 -22.74785 -22.07221 -19.77402 -18.22381 -17.43034 -16.76626 -16.61696 -15.97673 -15.41073 -14.73987 -14.44187 -14.16193 -13.49434 -13.10075 -13.06720 -12.95618 -12.83765 -12.60136 -11.95160 -11.71528 -11.17118 -10.98984 -10.59031 -9.79102 -8.90707 -8.71060 -6.29833 -0.05882 0.65085 1.43428 1.50070 1.59790 2.03088 2.27777 2.28337 2.92277 3.20175 3.32998 3.70455 4.02653 4.29608 4.55594 4.68401 4.87510 4.91617 5.01764 5.12036 5.29393 5.42015 5.49984 5.92674 6.20982 6.49513 6.55515 6.73942 7.12493 7.50669 8.26866 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.063057 B = 0.009645 C = 0.008403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.936056 B = 2902.450756 C = 3331.242487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.035 3.965 3 C -0.118 4.118 4 C 0.084 3.916 5 N -0.500 5.500 6 C -0.111 4.111 7 C 0.144 3.856 8 C -0.450 4.450 9 H 0.097 0.903 10 C 0.028 3.972 11 N -0.823 5.823 12 Si 1.014 2.986 13 H -0.261 1.261 14 H -0.268 1.268 15 H -0.252 1.252 16 N -0.450 5.450 17 C 0.322 3.678 18 N -0.515 5.515 19 H 0.082 0.918 20 H 0.087 0.913 21 H 0.077 0.923 22 H 0.153 0.847 23 H 0.188 0.812 24 H 0.295 0.705 25 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.325 -5.448 0.035 6.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.153 4.153 5 N -0.220 5.220 6 C -0.262 4.262 7 C 0.034 3.966 8 C -0.484 4.484 9 H 0.115 0.885 10 C -0.187 4.187 11 N -0.450 5.450 12 Si 0.833 3.167 13 H -0.186 1.186 14 H -0.192 1.192 15 H -0.175 1.175 16 N -0.139 5.139 17 C 0.040 3.960 18 N -0.231 5.231 19 H 0.101 0.899 20 H 0.106 0.894 21 H 0.096 0.904 22 H 0.170 0.830 23 H 0.205 0.795 24 H 0.106 0.894 25 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -4.982 -5.013 0.036 7.067 hybrid contribution 1.440 -0.061 0.003 1.441 sum -3.542 -5.074 0.039 6.188 Atomic orbital electron populations 1.20502 0.85360 1.03932 1.03455 1.21051 0.98535 0.86818 1.02003 1.20824 0.88147 1.00783 1.04337 1.20817 0.94921 0.81393 1.18203 1.69690 1.00621 1.32199 1.19538 1.23794 0.94648 0.91350 1.16437 1.19535 0.79497 0.96196 1.01415 1.18881 0.89733 0.93980 1.45757 0.88476 1.26869 1.01894 0.98557 0.91392 1.69650 1.22603 1.17626 1.35125 0.84702 0.75182 0.77258 0.79559 1.18603 1.19225 1.17535 1.44029 1.08067 1.08295 1.53523 1.24918 0.87565 0.90909 0.92612 1.67997 1.05319 1.29500 1.20293 0.89938 0.89399 0.90360 0.82954 0.79547 0.89374 0.76792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.90 10.17 71.24 0.72 -1.18 15 2 C 0.03 1.28 6.77 41.92 0.28 1.56 15 3 C -0.12 -4.97 9.78 22.44 0.22 -4.75 15 4 C 0.08 4.36 7.83 133.74 1.05 5.41 15 5 N -0.50 -28.41 11.22 -191.06 -2.14 -30.55 15 6 C -0.11 -6.39 10.84 85.09 0.92 -5.47 15 7 C 0.14 7.86 6.81 38.95 0.27 8.12 15 8 C -0.45 -22.39 9.29 23.05 0.21 -22.18 15 9 H 0.10 4.33 7.84 -2.91 -0.02 4.30 15 10 C 0.03 1.32 5.50 85.22 0.47 1.79 15 11 N -0.82 -40.76 10.31 21.83 0.23 -40.53 15 12 Si 1.01 34.64 29.56 68.60 2.03 36.67 15 13 H -0.26 -8.65 7.11 99.48 0.71 -7.95 15 14 H -0.27 -8.81 7.11 99.48 0.71 -8.11 15 15 H -0.25 -8.17 7.11 99.48 0.71 -7.46 15 16 N -0.45 -22.54 2.99 -347.89 -1.04 -23.58 15 17 C 0.32 13.35 12.11 180.00 2.18 15.53 15 18 N -0.51 -20.08 10.29 -186.86 -1.92 -22.01 15 19 H 0.08 1.84 8.14 -2.39 -0.02 1.82 15 20 H 0.09 1.84 8.08 -2.39 -0.02 1.82 15 21 H 0.08 1.83 8.14 -2.38 -0.02 1.81 15 22 H 0.15 5.53 8.06 -2.91 -0.02 5.50 15 23 H 0.19 10.97 5.72 -2.91 -0.02 10.95 15 24 H 0.29 13.02 8.30 -92.71 -0.77 12.25 15 25 H 0.22 7.25 8.06 -2.92 -0.02 7.22 15 Total: -1.00 -63.68 227.14 4.68 -59.00 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 1.21 Total: 22.16 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 6.33 Total: -1.16 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -4.88 Total: -116.67 kcal Atomic # 14 Polarization: 34.64 SS G_CDS: 2.03 Total: 36.67 kcal Total: -63.68 4.68 -59.00 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259601581.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.775 kcal (2) G-P(sol) polarization free energy of solvation -63.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds