Wall clock time and date at job start Mon Mar 30 2020 02:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32199 * 125.91731 * 2 1 4 4 C 1.32942 * 110.00447 * 179.97438 * 3 2 1 5 5 C 1.40577 * 132.87199 * 179.97438 * 4 3 2 6 6 C 1.36531 * 118.55910 * 180.02562 * 5 4 3 7 7 N 1.33436 * 120.47639 * 359.94112 * 6 5 4 8 8 C 1.30639 * 121.82952 * 0.02562 * 7 6 5 9 9 N 1.35707 * 121.05651 * 0.02562 * 8 7 6 10 10 C 1.38337 * 133.41478 * 179.66235 * 9 8 7 11 11 C 1.39805 * 126.89543 * 359.97438 * 10 9 8 12 12 H 1.08001 * 119.99763 * 147.32987 * 11 10 9 13 13 C 1.39908 * 120.00264 * 327.33107 * 11 10 9 14 14 N 1.31009 * 119.99872 * 339.78670 * 13 11 10 15 15 Si 1.86797 * 120.00102 * 159.79087 * 13 11 10 16 16 H 1.48498 * 109.47230 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47187 * 119.99863 * 15 13 11 18 18 H 1.48496 * 109.47441 * 239.99837 * 15 13 11 19 19 H 1.08996 * 109.47558 * 95.19016 * 1 2 3 20 20 H 1.09002 * 109.47119 * 215.18829 * 1 2 3 21 21 H 1.09004 * 109.47468 * 335.18416 * 1 2 3 22 22 H 1.08003 * 120.72035 * 0.04963 * 5 4 3 23 23 H 1.07999 * 119.76137 * 179.97438 * 6 5 4 24 24 H 1.07998 * 119.46818 * 180.02562 * 8 7 6 25 25 H 0.97000 * 119.99776 * 177.17323 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2825 1.0706 0.0000 4 6 3.5610 0.7061 0.0006 5 6 4.7632 1.4347 0.0003 6 6 5.9429 0.7474 0.0006 7 7 5.9487 -0.5870 0.0022 8 6 4.8418 -1.2808 0.0031 9 7 3.6312 -0.6676 0.0019 10 6 2.3290 -1.1344 -0.0035 11 6 1.9162 -2.4701 -0.0101 12 1 1.0032 -2.7556 0.4912 13 6 2.6859 -3.4370 -0.6660 14 7 3.5461 -3.0761 -1.5858 15 14 2.4868 -5.2425 -0.2304 16 1 1.4581 -5.3851 0.8310 17 1 2.0617 -5.9986 -1.4358 18 1 3.7818 -5.7793 0.2593 19 1 -0.3634 -0.0930 -1.0234 20 1 -0.3633 -0.8399 0.5922 21 1 -0.3634 0.9328 0.4313 22 1 4.7539 2.5147 0.0004 23 1 6.8781 1.2876 0.0000 24 1 4.8910 -2.3597 0.0048 25 1 4.1089 -3.7417 -2.0115 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259661407.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:24 Heat of formation + Delta-G solvation = 60.320725 kcal Electronic energy + Delta-G solvation = -12729.951432 eV Core-core repulsion = 10515.385691 eV Total energy + Delta-G solvation = -2214.565741 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.09025 -38.90677 -35.98540 -33.93255 -32.82221 -30.92570 -29.13629 -26.84510 -24.16646 -23.65556 -21.14044 -19.87289 -18.14398 -17.57919 -17.02083 -16.45858 -16.06636 -15.61245 -14.84671 -14.19727 -13.90128 -13.61911 -13.20521 -13.15392 -12.90454 -12.86586 -12.51532 -11.99093 -11.74989 -11.20345 -10.87908 -10.68677 -9.69706 -9.00304 -8.52883 -6.35465 -0.03020 0.67084 1.41196 1.44087 1.59038 2.10478 2.19838 2.23905 2.93277 3.00923 3.50345 3.65225 4.05150 4.32497 4.52345 4.74353 4.91595 4.99527 5.02968 5.14127 5.22226 5.29610 5.54626 5.88466 6.22803 6.41303 6.58091 6.69898 7.17947 7.39300 8.20371 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.031916 B = 0.015857 C = 0.011081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.087131 B = 1765.326032 C = 2526.215672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 C -0.094 4.094 3 N -0.491 5.491 4 C 0.098 3.902 5 C -0.122 4.122 6 C 0.020 3.980 7 N -0.531 5.531 8 C 0.348 3.652 9 N -0.423 5.423 10 C 0.159 3.841 11 C -0.470 4.470 12 H 0.109 0.891 13 C 0.034 3.966 14 N -0.842 5.842 15 Si 0.988 3.012 16 H -0.252 1.252 17 H -0.270 1.270 18 H -0.263 1.263 19 H 0.058 0.942 20 H 0.073 0.927 21 H 0.064 0.936 22 H 0.162 0.838 23 H 0.194 0.806 24 H 0.187 0.813 25 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.789 -1.308 2.322 2.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.227 4.227 3 N -0.212 5.212 4 C -0.140 4.140 5 C -0.145 4.145 6 C -0.119 4.119 7 N -0.247 5.247 8 C 0.067 3.933 9 N -0.108 5.108 10 C 0.047 3.953 11 C -0.504 4.504 12 H 0.127 0.873 13 C -0.180 4.180 14 N -0.471 5.471 15 Si 0.808 3.192 16 H -0.175 1.175 17 H -0.195 1.195 18 H -0.187 1.187 19 H 0.076 0.924 20 H 0.092 0.908 21 H 0.083 0.917 22 H 0.179 0.821 23 H 0.211 0.789 24 H 0.203 0.797 25 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.499 -0.755 2.139 2.719 hybrid contribution -0.358 -0.972 -0.270 1.070 sum 1.141 -1.726 1.869 2.789 Atomic orbital electron populations 1.19715 0.85799 1.01917 1.01442 1.21877 0.97279 0.87322 1.16199 1.69525 0.99192 1.31860 1.20625 1.20876 0.94700 0.81938 1.16530 1.21087 0.88309 1.01512 1.03544 1.22445 0.98490 0.88973 1.01954 1.68165 1.25854 1.10212 1.20465 1.24657 0.78460 0.99434 0.90752 1.44115 1.07258 1.08826 1.50642 1.19144 0.79676 0.95851 1.00666 1.18810 1.10433 0.89316 1.31865 0.87292 1.26800 0.93311 1.06389 0.91515 1.69959 1.19804 1.39596 1.17786 0.85041 0.79835 0.74986 0.79347 1.17504 1.19452 1.18735 0.92362 0.90812 0.91667 0.82053 0.78895 0.79655 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.24 10.21 71.24 0.73 -0.51 15 2 C -0.09 -4.76 7.20 42.95 0.31 -4.45 15 3 N -0.49 -25.77 11.22 -179.25 -2.01 -27.78 15 4 C 0.10 4.98 7.83 133.74 1.05 6.03 15 5 C -0.12 -5.08 10.16 22.44 0.23 -4.85 15 6 C 0.02 0.75 11.18 84.05 0.94 1.69 15 7 N -0.53 -23.24 10.37 -198.82 -2.06 -25.30 15 8 C 0.35 16.73 10.54 180.01 1.90 18.63 15 9 N -0.42 -22.03 2.90 -347.91 -1.01 -23.04 15 10 C 0.16 8.42 6.27 38.95 0.24 8.66 15 11 C -0.47 -23.16 8.96 23.05 0.21 -22.95 15 12 H 0.11 5.02 7.75 -2.91 -0.02 4.99 15 13 C 0.03 1.55 4.57 85.22 0.39 1.94 15 14 N -0.84 -41.05 10.57 21.83 0.23 -40.82 15 15 Si 0.99 34.62 29.61 68.60 2.03 36.65 15 16 H -0.25 -8.52 7.11 99.48 0.71 -7.82 15 17 H -0.27 -9.28 7.11 99.48 0.71 -8.57 15 18 H -0.26 -8.87 7.11 99.48 0.71 -8.16 15 19 H 0.06 2.22 8.14 -2.39 -0.02 2.21 15 20 H 0.07 2.69 7.92 -2.39 -0.02 2.67 15 21 H 0.06 2.37 8.14 -2.38 -0.02 2.35 15 22 H 0.16 5.55 8.06 -2.91 -0.02 5.52 15 23 H 0.19 5.47 8.06 -2.91 -0.02 5.45 15 24 H 0.19 8.76 6.06 -2.91 -0.02 8.74 15 25 H 0.29 12.99 8.30 -92.71 -0.77 12.22 15 Total: -1.00 -60.89 225.36 4.38 -56.51 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 1.21 Total: 19.59 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 5.99 Total: 4.18 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -4.85 Total: -116.95 kcal Atomic # 14 Polarization: 34.62 SS G_CDS: 2.03 Total: 36.65 kcal Total: -60.89 4.38 -56.51 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259661407.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.834 kcal (2) G-P(sol) polarization free energy of solvation -60.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds