Wall clock time and date at job start Mon Mar 30 2020 02:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35976 * 126.42848 * 2 1 4 4 N 1.33056 * 108.64785 * 180.02562 * 3 2 1 5 5 C 1.32488 * 109.18840 * 359.97438 * 4 3 2 6 6 C 1.40466 * 133.35361 * 180.29206 * 5 4 3 7 7 C 1.38593 * 118.84381 * 180.10118 * 6 5 4 8 8 N 1.32133 * 120.64221 * 359.58268 * 7 6 5 9 9 C 1.33202 * 121.72055 * 0.22200 * 8 7 6 10 10 C 1.39292 * 119.65431 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99680 * 193.31750 * 10 9 8 12 12 C 1.40395 * 120.00074 * 13.31744 * 10 9 8 13 13 N 1.30567 * 120.00002 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00048 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47106 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46930 * 119.99810 * 14 12 10 17 17 H 1.48493 * 109.47165 * 239.99910 * 14 12 10 18 18 N 1.36238 * 126.43292 * 180.02562 * 2 1 3 19 19 H 1.08999 * 109.47126 * 95.70265 * 1 2 3 20 20 H 1.08998 * 109.47094 * 215.70058 * 1 2 3 21 21 H 1.09006 * 109.47494 * 335.70341 * 1 2 3 22 22 H 1.08000 * 125.67653 * 0.02562 * 3 2 1 23 23 H 1.08000 * 120.57620 * 359.96126 * 6 5 4 24 24 H 1.07997 * 119.68326 * 179.80362 * 7 6 5 25 25 H 0.96997 * 120.00412 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3145 1.0941 0.0000 4 7 3.5815 0.6877 -0.0006 5 6 3.6140 -0.6367 -0.0004 6 6 4.6588 -1.5756 0.0045 7 6 4.3446 -2.9255 0.0009 8 7 3.0847 -3.3237 0.0014 9 6 2.0754 -2.4544 0.0009 10 6 0.7633 -2.9219 0.0020 11 1 -0.0509 -2.2459 -0.2138 12 6 0.4992 -4.2717 0.2837 13 7 1.4835 -5.0890 0.5441 14 14 -1.2606 -4.8983 0.2858 15 1 -2.1842 -3.7814 -0.0376 16 1 -1.4055 -5.9703 -0.7317 17 1 -1.5909 -5.4417 1.6277 18 7 2.3161 -1.0961 -0.0005 19 1 -0.3633 -0.1021 -1.0226 20 1 -0.3633 -0.8345 0.5997 21 1 -0.3634 0.9367 0.4229 22 1 1.9826 2.1218 0.0004 23 1 5.6889 -1.2513 0.0086 24 1 5.1372 -3.6591 0.0014 25 1 1.3011 -6.0215 0.7391 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259764417.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:40 Heat of formation + Delta-G solvation = 67.750991 kcal Electronic energy + Delta-G solvation = -12712.360802 eV Core-core repulsion = 10498.117261 eV Total energy + Delta-G solvation = -2214.243541 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.22908 -38.65514 -35.97811 -34.35306 -32.17777 -31.10133 -29.19333 -26.44491 -24.32947 -23.44187 -21.62415 -19.43799 -18.40617 -17.70514 -16.76761 -16.62948 -15.68956 -15.10766 -14.53685 -14.13629 -13.94896 -13.77637 -13.63389 -13.37073 -12.92311 -12.74553 -12.15891 -11.93198 -11.63495 -11.19558 -10.80823 -10.09091 -9.79688 -8.74959 -8.64513 -6.84032 0.35253 0.91706 1.39000 1.47272 1.58602 2.04556 2.21941 2.25052 2.66566 3.47499 3.75014 3.99404 4.16730 4.43008 4.50087 4.73439 4.77668 4.86754 4.98363 5.11276 5.22099 5.38697 5.57754 5.88598 6.10347 6.16221 6.44547 6.55021 7.30050 7.86479 8.09886 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.038384 B = 0.014224 C = 0.010469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.298648 B = 1967.986091 C = 2673.862412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.091 4.091 3 C -0.009 4.009 4 N -0.565 5.565 5 C 0.246 3.754 6 C -0.347 4.347 7 C 0.147 3.853 8 N -0.561 5.561 9 C 0.384 3.616 10 C -0.415 4.415 11 H 0.125 0.875 12 C 0.023 3.977 13 N -0.717 5.717 14 Si 1.005 2.995 15 H -0.241 1.241 16 H -0.260 1.260 17 H -0.260 1.260 18 N -0.432 5.432 19 H 0.071 0.929 20 H 0.068 0.932 21 H 0.103 0.897 22 H 0.200 0.800 23 H 0.131 0.869 24 H 0.166 0.834 25 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.190 0.403 -0.080 7.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.205 4.205 3 C -0.158 4.158 4 N -0.288 5.288 5 C 0.000 4.000 6 C -0.377 4.377 7 C -0.010 4.010 8 N -0.283 5.283 9 C 0.160 3.840 10 C -0.448 4.448 11 H 0.143 0.857 12 C -0.205 4.205 13 N -0.337 5.337 14 Si 0.822 3.178 15 H -0.164 1.164 16 H -0.185 1.185 17 H -0.184 1.184 18 N -0.113 5.113 19 H 0.090 0.910 20 H 0.087 0.913 21 H 0.122 0.878 22 H 0.217 0.783 23 H 0.149 0.851 24 H 0.183 0.817 25 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.616 -0.155 -0.024 6.618 hybrid contribution -0.261 0.080 0.031 0.275 sum -6.877 -0.076 0.008 6.878 Atomic orbital electron populations 1.20357 0.84972 1.04140 1.02736 1.21870 0.96352 0.85208 1.17091 1.22724 0.87838 0.99238 1.06037 1.70325 1.23102 1.07086 1.28251 1.21145 0.85078 0.90957 1.02861 1.20580 0.96784 0.91547 1.28740 1.22838 0.94652 0.93322 0.90180 1.69291 0.98266 1.30542 1.30214 1.20459 0.96536 0.75119 0.91857 1.20181 0.90823 0.96997 1.36814 0.85725 1.27244 1.05105 0.95565 0.92591 1.70065 1.36029 1.05956 1.21614 0.84808 0.73980 0.79533 0.79529 1.16400 1.18478 1.18441 1.44656 1.08888 1.07541 1.50208 0.90988 0.91349 0.87848 0.78345 0.85073 0.81723 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.13 8.98 71.24 0.64 -1.49 15 2 C -0.09 -4.04 7.01 41.35 0.29 -3.75 15 3 C -0.01 -0.39 11.77 83.98 0.99 0.60 15 4 N -0.57 -28.90 11.29 -193.99 -2.19 -31.10 15 5 C 0.25 13.21 7.85 133.81 1.05 14.26 15 6 C -0.35 -17.49 10.22 22.90 0.23 -17.25 15 7 C 0.15 7.24 11.22 84.73 0.95 8.19 15 8 N -0.56 -30.56 7.93 -192.87 -1.53 -32.09 15 9 C 0.38 20.67 7.37 133.22 0.98 21.65 15 10 C -0.41 -19.94 8.47 23.05 0.20 -19.75 15 11 H 0.13 5.35 4.65 -2.91 -0.01 5.33 15 12 C 0.02 1.01 5.49 85.41 0.47 1.48 15 13 N -0.72 -34.15 11.52 21.90 0.25 -33.90 15 14 Si 1.00 31.58 29.56 68.60 2.03 33.61 15 15 H -0.24 -7.03 7.11 99.48 0.71 -6.32 15 16 H -0.26 -7.93 7.11 99.48 0.71 -7.23 15 17 H -0.26 -7.87 7.11 99.48 0.71 -7.16 15 18 N -0.43 -22.60 3.00 -336.79 -1.01 -23.62 15 19 H 0.07 2.18 8.14 -2.39 -0.02 2.16 15 20 H 0.07 2.34 6.02 -2.39 -0.01 2.33 15 21 H 0.10 2.61 8.14 -2.38 -0.02 2.59 15 22 H 0.20 6.64 8.06 -2.91 -0.02 6.62 15 23 H 0.13 5.97 8.06 -2.91 -0.02 5.94 15 24 H 0.17 6.81 8.06 -2.91 -0.02 6.78 15 25 H 0.30 12.32 8.29 -92.71 -0.77 11.56 15 Total: -1.00 -65.11 222.43 4.56 -60.55 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 1.22 Total: 22.60 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 5.80 Total: 3.94 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -4.48 Total: -120.70 kcal Atomic # 14 Polarization: 31.58 SS G_CDS: 2.03 Total: 33.61 kcal Total: -65.11 4.56 -60.55 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259764417.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.296 kcal (2) G-P(sol) polarization free energy of solvation -65.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds