Wall clock time and date at job start Mon Mar 30 2020 02:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99801 * 2 1 4 4 H 1.48497 * 109.47251 * 264.08260 * 3 2 1 5 5 H 1.48497 * 109.47243 * 24.08456 * 3 2 1 6 6 H 1.48503 * 109.47278 * 144.08318 * 3 2 1 7 7 C 1.37876 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99537 * 24.14631 * 7 2 1 9 9 C 1.50698 * 120.00276 * 204.41587 * 7 2 1 10 10 C 1.52997 * 115.55275 * 278.25064 * 9 7 2 11 11 C 1.50704 * 109.46984 * 306.03676 * 10 9 7 12 12 C 1.38678 * 120.41725 * 86.81717 * 11 10 9 13 13 C 1.38628 * 118.41939 * 180.02562 * 12 11 10 14 14 C 1.38231 * 119.16322 * 0.02562 * 13 12 11 15 15 N 1.31856 * 120.76164 * 359.97438 * 14 13 12 16 16 C 1.31887 * 121.72386 * 359.70837 * 15 14 13 17 17 C 1.52995 * 117.49712 * 132.57838 * 9 7 2 18 18 C 1.52998 * 117.49608 * 63.91874 * 9 7 2 19 19 H 0.96999 * 120.00505 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.47281 * 66.03429 * 10 9 7 21 21 H 1.08999 * 109.47765 * 186.03952 * 10 9 7 22 22 H 1.07997 * 120.78808 * 359.97438 * 12 11 10 23 23 H 1.08001 * 120.41845 * 180.02562 * 13 12 11 24 24 H 1.07997 * 119.61704 * 179.97438 * 14 13 12 25 25 H 1.08003 * 119.61518 * 180.31155 * 16 15 14 26 26 H 1.09001 * 117.50471 * 359.97438 * 17 9 7 27 27 H 1.09002 * 117.49879 * 145.02694 * 17 9 7 28 28 H 1.09008 * 117.49895 * 214.97813 * 18 9 7 29 29 H 1.09003 * 117.50293 * 359.97333 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6215 1.9743 -1.3926 5 1 1.3896 2.6855 0.5713 6 1 3.4785 1.4796 0.8213 7 6 2.0045 -1.1940 0.0005 8 1 1.5354 -2.0886 -0.3817 9 6 3.4104 -1.2521 0.5400 10 6 4.5074 -0.8021 -0.4269 11 6 4.3928 -1.5788 -1.7132 12 6 3.5567 -1.1375 -2.7278 13 6 3.4825 -1.8843 -3.8934 14 6 4.2387 -3.0361 -4.0046 15 7 5.0233 -3.4256 -3.0191 16 6 5.1234 -2.7369 -1.8988 17 6 3.7473 -2.3833 1.5135 18 6 3.6100 -0.9474 2.0260 19 1 -0.4851 0.8400 -0.0004 20 1 4.3952 0.2621 -0.6339 21 1 5.4841 -0.9840 0.0215 22 1 2.9764 -0.2340 -2.6122 23 1 2.8421 -1.5702 -4.7042 24 1 4.1862 -3.6237 -4.9093 25 1 5.7805 -3.0847 -1.1154 26 1 2.9519 -3.0852 1.7642 27 1 4.7506 -2.8066 1.4655 28 1 4.5230 -0.4267 2.3149 29 1 2.7244 -0.7045 2.6134 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259823321.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:56 Heat of formation + Delta-G solvation = 36.746430 kcal Electronic energy + Delta-G solvation = -12862.993741 eV Core-core repulsion = 10750.946086 eV Total energy + Delta-G solvation = -2112.047656 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.98736 -38.60333 -34.27196 -33.83251 -32.54619 -28.55032 -27.32726 -24.29764 -23.26115 -22.95548 -20.80953 -18.32677 -17.74341 -17.19608 -16.56086 -16.01137 -15.53319 -14.88598 -14.74903 -14.23336 -14.09776 -13.87719 -13.64619 -12.93019 -12.60641 -12.27829 -12.09785 -11.96813 -11.72326 -10.83282 -10.53713 -10.48102 -10.39740 -10.04534 -9.63537 -8.32863 -6.25691 0.35688 0.51499 1.33883 1.38899 1.48773 2.38304 2.96605 3.03427 3.30054 3.70452 4.03589 4.11079 4.21369 4.30469 4.33590 4.49701 4.56686 4.63200 4.91728 4.94357 4.98352 5.02456 5.15597 5.35018 5.40910 5.56258 5.69890 5.79094 5.96166 6.35925 6.76828 7.13639 7.36937 8.83286 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.032376 B = 0.014101 C = 0.011796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.626679 B = 1985.165949 C = 2373.172926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.038 3.962 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.301 1.301 6 H -0.226 1.226 7 C -0.483 4.483 8 H 0.020 0.980 9 C -0.015 4.015 10 C -0.045 4.045 11 C -0.104 4.104 12 C -0.075 4.075 13 C -0.177 4.177 14 C 0.076 3.924 15 N -0.507 5.507 16 C 0.086 3.914 17 C -0.170 4.170 18 C -0.186 4.186 19 H 0.264 0.736 20 H 0.056 0.944 21 H 0.089 0.911 22 H 0.112 0.888 23 H 0.151 0.849 24 H 0.181 0.819 25 H 0.169 0.831 26 H 0.064 0.936 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.706 -0.570 -3.747 11.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.162 4.162 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.228 1.228 6 H -0.149 1.149 7 C -0.520 4.520 8 H 0.038 0.962 9 C -0.016 4.016 10 C -0.083 4.083 11 C -0.106 4.106 12 C -0.101 4.101 13 C -0.197 4.197 14 C -0.081 4.081 15 N -0.216 5.216 16 C -0.071 4.071 17 C -0.207 4.207 18 C -0.223 4.223 19 H 0.073 0.927 20 H 0.074 0.926 21 H 0.107 0.893 22 H 0.130 0.870 23 H 0.168 0.832 24 H 0.198 0.802 25 H 0.186 0.814 26 H 0.083 0.917 27 H 0.126 0.874 28 H 0.120 0.880 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.038 -1.246 -3.842 11.753 hybrid contribution -1.215 1.602 0.124 2.014 sum 9.823 0.356 -3.718 10.509 Atomic orbital electron populations 1.70194 1.08603 1.28088 1.50362 1.25581 0.94563 1.02332 0.93689 0.86365 0.80895 0.79411 0.79807 1.19177 1.22808 1.14875 1.20138 0.96219 0.94210 1.41403 0.96177 1.19217 0.93398 1.01011 0.87970 1.20350 0.98365 0.97640 0.91978 1.20800 0.96554 0.97280 0.95974 1.21582 0.95304 0.99859 0.93335 1.22350 1.01389 0.97033 0.98896 1.23078 0.92502 0.94514 0.98007 1.67644 1.19955 1.32233 1.01746 1.22806 0.98072 0.90979 0.95207 1.22862 1.01337 0.91012 1.05490 1.23013 1.01551 0.99140 0.98605 0.92653 0.92559 0.89279 0.87010 0.83159 0.80196 0.81425 0.91694 0.87394 0.88037 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.96 21.45 0.30 -56.53 15 2 C 0.04 2.10 5.42 84.66 0.46 2.56 15 3 Si 0.91 41.70 25.30 68.60 1.74 43.44 15 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 15 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 15 6 H -0.23 -9.30 6.10 99.48 0.61 -8.70 15 7 C -0.48 -26.32 7.93 25.60 0.20 -26.12 15 8 H 0.02 1.27 8.06 -2.91 -0.02 1.25 15 9 C -0.02 -0.65 0.91 -52.93 -0.05 -0.70 15 10 C -0.05 -1.68 4.94 29.85 0.15 -1.53 15 11 C -0.10 -3.89 4.81 -19.77 -0.10 -3.98 15 12 C -0.07 -2.88 9.01 22.47 0.20 -2.67 15 13 C -0.18 -5.73 10.11 22.36 0.23 -5.51 15 14 C 0.08 2.30 11.18 84.69 0.95 3.25 15 15 N -0.51 -17.23 10.36 -195.84 -2.03 -19.26 15 16 C 0.09 2.90 10.85 84.67 0.92 3.82 15 17 C -0.17 -6.51 9.92 30.62 0.30 -6.21 15 18 C -0.19 -7.32 8.72 30.62 0.27 -7.05 15 19 H 0.26 15.16 8.31 -92.71 -0.77 14.39 15 20 H 0.06 2.13 5.19 -2.39 -0.01 2.12 15 21 H 0.09 2.66 8.02 -2.39 -0.02 2.64 15 22 H 0.11 4.66 7.98 -2.91 -0.02 4.63 15 23 H 0.15 3.97 8.06 -2.91 -0.02 3.95 15 24 H 0.18 4.04 8.06 -2.91 -0.02 4.02 15 25 H 0.17 4.74 8.06 -2.91 -0.02 4.72 15 26 H 0.06 2.70 8.14 -2.39 -0.02 2.68 15 27 H 0.11 3.34 8.14 -2.39 -0.02 3.32 15 28 H 0.10 3.35 8.14 -2.38 -0.02 3.33 15 29 H 0.06 2.83 8.14 -2.39 -0.02 2.81 15 Total: -1.00 -64.21 248.04 4.56 -59.65 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 1.02 Total: 16.85 kcal Atomic # 6 Polarization: -47.68 SS G_CDS: 3.53 Total: -44.15 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -1.73 Total: -75.78 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.74 Total: 43.44 kcal Total: -64.21 4.56 -59.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259823321.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.399 kcal (2) G-P(sol) polarization free energy of solvation -64.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds