Wall clock time and date at job start Mon Mar 30 2020 02:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31072 * 1 3 3 Si 1.86804 * 119.99482 * 2 1 4 4 H 1.48506 * 109.47061 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47154 * 299.99653 * 3 2 1 6 6 H 1.48498 * 109.47593 * 60.00175 * 3 2 1 7 7 C 1.39676 * 120.00349 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99741 * 179.97438 * 7 2 1 9 9 C 1.40935 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.41753 * 126.62224 * 0.17640 * 9 7 2 11 11 N 1.30210 * 108.51612 * 180.27441 * 10 9 7 12 12 N 1.39855 * 109.68669 * 359.73748 * 11 10 9 13 13 H 0.97005 * 125.79669 * 179.97438 * 12 11 10 14 14 C 1.36315 * 108.40735 * 0.02562 * 12 11 10 15 15 C 1.47027 * 126.68157 * 180.02562 * 14 12 11 16 16 C 1.46677 * 127.00198 * 225.14491 * 15 14 12 17 17 C 1.34468 * 106.58767 * 180.29670 * 16 15 14 18 18 N 1.36437 * 109.19501 * 359.75411 * 17 16 15 19 19 H 0.97009 * 124.90070 * 180.02562 * 18 17 16 20 20 C 1.35656 * 110.20445 * 359.97438 * 18 17 16 21 21 H 0.97006 * 120.00725 * 0.02562 * 1 2 3 22 22 H 1.07993 * 125.74380 * 359.97438 * 10 9 7 23 23 H 1.08000 * 126.70620 * 0.04850 * 16 15 14 24 24 H 1.07996 * 125.40113 * 179.73273 * 17 16 15 25 25 H 1.08002 * 125.99088 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3107 0.0000 0.0000 3 14 2.2446 1.6179 0.0000 4 1 3.7047 1.3466 -0.0006 5 1 1.8858 2.3965 -1.2125 6 1 1.8859 2.3966 1.2125 7 6 2.0092 -1.2096 -0.0005 8 1 3.0891 -1.2095 -0.0010 9 6 1.3046 -2.4302 -0.0005 10 6 -0.1034 -2.5938 -0.0035 11 7 -0.3717 -3.8679 0.0034 12 7 0.8198 -4.6003 0.0052 13 1 0.8912 -5.5677 0.0104 14 6 1.8638 -3.7238 -0.0004 15 6 3.2946 -4.0621 -0.0014 16 6 4.3452 -3.4575 0.8246 17 6 5.4960 -4.0663 0.4881 18 7 5.2445 -5.0011 -0.4734 19 1 5.9142 -5.5732 -0.8798 20 6 3.9227 -5.0159 -0.7781 21 1 -0.4851 0.8400 -0.0004 22 1 -0.8312 -1.7959 -0.0059 23 1 4.2197 -2.6735 1.5567 24 1 6.4655 -3.8494 0.9115 25 1 3.4461 -5.6570 -1.5049 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259859181.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:40 Heat of formation + Delta-G solvation = 107.709075 kcal Electronic energy + Delta-G solvation = -12303.784056 eV Core-core repulsion = 10091.273228 eV Total energy + Delta-G solvation = -2212.510828 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.98655 -38.65126 -33.40098 -31.00878 -29.52386 -28.73702 -27.43339 -24.57234 -20.95143 -20.02276 -19.33428 -18.63744 -17.91632 -16.24357 -14.80131 -14.66316 -13.44938 -13.14827 -12.84556 -12.77481 -12.55478 -12.12908 -11.38763 -11.16795 -11.11787 -10.90624 -10.30801 -9.99370 -9.24666 -8.80483 -8.26684 -7.78954 -7.45256 -6.81945 -6.40549 -3.86399 2.70134 3.07856 3.24045 3.29338 3.30213 3.89410 3.98968 4.17520 4.46805 4.62119 5.58652 5.66508 5.75567 6.19313 6.47258 6.74003 6.91529 6.92687 7.35773 7.49838 7.67553 7.79273 7.86186 8.16403 8.23924 8.73301 8.96104 9.15605 9.23950 9.60407 10.57952 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.029581 B = 0.013096 C = 0.009377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.338556 B = 2137.537891 C = 2985.169192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.063 3.937 3 Si 0.913 3.087 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.418 4.418 8 H 0.076 0.924 9 C 0.006 3.994 10 C 0.023 3.977 11 N -0.333 5.333 12 N -0.505 5.505 13 H 0.411 0.589 14 C -0.040 4.040 15 C -0.042 4.042 16 C -0.173 4.173 17 C -0.032 4.032 18 N -0.569 5.569 19 H 0.404 0.596 20 C -0.047 4.047 21 H 0.273 0.727 22 H 0.202 0.798 23 H 0.138 0.862 24 H 0.154 0.846 25 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.175 -4.854 -0.406 9.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.148 4.148 3 Si 0.740 3.260 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.452 4.452 8 H 0.094 0.906 9 C -0.004 4.004 10 C -0.164 4.164 11 N -0.156 5.156 12 N -0.219 5.219 13 H 0.250 0.750 14 C -0.161 4.161 15 C -0.051 4.051 16 C -0.200 4.200 17 C -0.161 4.161 18 N -0.166 5.166 19 H 0.238 0.762 20 C -0.178 4.178 21 H 0.084 0.916 22 H 0.218 0.782 23 H 0.156 0.844 24 H 0.172 0.828 25 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 7.173 -5.529 -0.454 9.068 hybrid contribution 1.407 0.676 -0.233 1.579 sum 8.581 -4.852 -0.687 9.882 Atomic orbital electron populations 1.69494 1.07160 1.27873 1.42396 1.25721 0.94774 1.00768 0.93501 0.86165 0.80467 0.81347 0.78042 1.18861 1.20418 1.20362 1.18796 0.94216 0.88877 1.43316 0.90627 1.18105 0.91337 0.90845 1.00157 1.24996 0.97884 0.92065 1.01488 1.76353 1.06261 1.07065 1.25882 1.45595 1.03142 1.06456 1.66705 0.74968 1.18623 0.85338 0.89960 1.22150 1.18620 0.90297 0.97766 0.98377 1.22027 0.91355 1.03334 1.03237 1.21506 0.99450 0.97183 0.97935 1.41450 1.08104 1.32772 1.34237 0.76175 1.22095 0.83326 1.06621 1.05719 0.91602 0.78164 0.84421 0.82837 0.82828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.29 10.31 55.54 0.57 -21.72 15 2 C 0.06 1.65 5.49 -17.34 -0.10 1.56 15 3 Si 0.91 19.82 29.56 -169.99 -5.02 14.80 15 4 H -0.26 -5.68 7.11 56.52 0.40 -5.28 15 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 6 H -0.28 -5.93 7.11 56.52 0.40 -5.52 15 7 C -0.42 -11.53 9.08 -38.02 -0.35 -11.88 15 8 H 0.08 2.04 6.97 -52.49 -0.37 1.68 15 9 C 0.01 0.15 5.96 -106.52 -0.63 -0.48 15 10 C 0.02 0.65 10.88 -16.90 -0.18 0.46 15 11 N -0.33 -8.67 12.57 30.92 0.39 -8.28 15 12 N -0.51 -11.92 7.38 33.88 0.25 -11.67 15 13 H 0.41 8.11 8.96 -182.78 -1.64 6.47 15 14 C -0.04 -1.00 7.23 -81.30 -0.59 -1.58 15 15 C -0.04 -0.90 6.03 -102.97 -0.62 -1.52 15 16 C -0.17 -3.45 10.18 -37.51 -0.38 -3.83 15 17 C -0.03 -0.51 11.86 -16.84 -0.20 -0.71 15 18 N -0.57 -8.22 5.95 -12.30 -0.07 -8.29 15 19 H 0.40 4.13 8.96 -40.82 -0.37 3.76 15 20 C -0.05 -0.83 12.00 -15.91 -0.19 -1.03 15 21 H 0.27 6.67 8.30 -40.82 -0.34 6.33 15 22 H 0.20 5.61 5.74 -52.49 -0.30 5.31 15 23 H 0.14 2.79 8.06 -52.49 -0.42 2.37 15 24 H 0.15 1.84 8.06 -52.49 -0.42 1.41 15 25 H 0.15 2.36 8.06 -52.49 -0.42 1.94 15 LS Contribution 228.90 15.07 3.45 3.45 Total: -1.00 -31.08 228.90 -6.75 -37.83 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -3.07 Total: 12.89 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -3.24 Total: -19.00 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 1.14 Total: -49.97 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -31.08 -6.75 -37.83 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259859181.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.543 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds