Wall clock time and date at job start Mon Mar 30 2020 02:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31087 * 1 3 3 Si 1.86799 * 120.00198 * 2 1 4 4 H 1.48493 * 109.47371 * 240.00492 * 3 2 1 5 5 H 1.48499 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46883 * 120.00131 * 3 2 1 7 7 C 1.39607 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00062 * 179.97438 * 7 2 1 9 9 C 1.41340 * 120.00378 * 359.97438 * 7 2 1 10 10 C 1.39410 * 127.03077 * 359.97423 * 9 7 2 11 11 N 1.35597 * 107.96958 * 180.02562 * 10 9 7 12 12 H 0.97003 * 124.86587 * 180.25753 * 11 10 9 13 13 C 1.36975 * 110.26298 * 0.02562 * 11 10 9 14 14 N 1.39623 * 125.36250 * 179.97438 * 13 11 10 15 15 C 1.35815 * 126.10408 * 0.02562 * 14 13 11 16 16 C 1.35347 * 107.61361 * 179.97438 * 15 14 13 17 17 C 1.39896 * 107.97275 * 0.02562 * 16 15 14 18 18 N 1.30888 * 108.36558 * 359.71468 * 17 16 15 19 19 C 1.35097 * 109.26475 * 359.97438 * 13 11 10 20 20 H 0.97001 * 119.99995 * 359.97438 * 1 2 3 21 21 H 1.07999 * 126.01166 * 0.04397 * 10 9 7 22 22 H 1.07998 * 126.19542 * 0.02562 * 15 14 13 23 23 H 1.08002 * 126.01307 * 179.97438 * 16 15 14 24 24 H 1.08003 * 125.81704 * 180.02562 * 17 16 15 25 25 H 1.08002 * 126.71386 * 180.02562 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2449 1.6177 0.0000 4 1 3.0986 1.6964 -1.2125 5 1 1.2800 2.7464 0.0006 6 1 3.0986 1.6963 1.2125 7 6 2.0089 -1.2091 -0.0005 8 1 3.0889 -1.2091 -0.0010 9 6 1.3022 -2.4331 -0.0005 10 6 -0.0814 -2.6038 0.0005 11 7 -0.3387 -3.9352 0.0006 12 1 -1.2253 -4.3286 -0.0023 13 6 0.8330 -4.6447 0.0004 14 7 0.9343 -6.0373 0.0010 15 6 -0.1020 -6.9151 0.0014 16 6 0.4193 -8.1641 0.0013 17 6 1.8136 -8.0500 0.0014 18 7 2.1232 -6.7783 -0.0046 19 6 1.8749 -3.7847 -0.0006 20 1 -0.4850 0.8401 0.0004 21 1 -0.8186 -1.8145 0.0007 22 1 -1.1520 -6.6623 0.0010 23 1 -0.1424 -9.0867 0.0020 24 1 2.5150 -8.8713 0.0010 25 1 2.9239 -4.0415 -0.0014 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259868178.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:57 Heat of formation + Delta-G solvation = 124.078702 kcal Electronic energy + Delta-G solvation = -12093.545716 eV Core-core repulsion = 9881.744729 eV Total energy + Delta-G solvation = -2211.800988 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.93705 -38.93950 -33.54989 -31.88149 -30.21328 -29.38760 -26.84206 -24.78561 -21.78175 -20.88460 -19.40651 -18.67055 -18.24574 -15.84842 -15.20591 -14.78355 -14.47119 -13.79537 -13.14258 -12.61243 -12.55527 -12.48067 -11.96631 -11.14025 -11.12887 -10.92334 -10.37210 -9.96807 -9.67739 -9.64431 -9.21375 -8.65500 -7.48267 -6.47256 -6.43379 -4.04087 1.95057 2.76562 3.09158 3.14226 3.20434 3.24914 3.79421 4.14084 4.25004 4.49639 5.04472 5.15187 5.60285 5.75271 5.92456 6.19229 6.72049 6.82894 6.96697 7.07984 7.29987 7.37456 7.74163 7.99956 8.10506 8.33924 8.72959 8.99821 9.18635 9.21343 10.56734 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.090487 B = 0.007493 C = 0.006937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.364008 B = 3736.101225 C = 4035.623212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.058 3.942 3 Si 0.917 3.083 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.426 4.426 8 H 0.070 0.930 9 C 0.021 3.979 10 C -0.085 4.085 11 N -0.574 5.574 12 H 0.391 0.609 13 C 0.184 3.816 14 N -0.268 5.268 15 C 0.027 3.973 16 C -0.277 4.277 17 C 0.024 3.976 18 N -0.274 5.274 19 C -0.208 4.208 20 H 0.272 0.728 21 H 0.197 0.803 22 H 0.165 0.835 23 H 0.145 0.855 24 H 0.183 0.817 25 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.439 -8.347 0.001 8.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.151 4.151 3 Si 0.743 3.257 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.460 4.460 8 H 0.088 0.912 9 C 0.016 3.984 10 C -0.213 4.213 11 N -0.176 5.176 12 H 0.224 0.776 13 C -0.015 4.015 14 N -0.043 5.043 15 C -0.119 4.119 16 C -0.307 4.307 17 C -0.160 4.160 18 N -0.097 5.097 19 C -0.240 4.240 20 H 0.083 0.917 21 H 0.214 0.786 22 H 0.183 0.817 23 H 0.162 0.838 24 H 0.200 0.800 25 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.774 -7.213 -0.002 7.428 hybrid contribution -0.821 -0.209 0.000 0.847 sum -2.595 -7.421 -0.002 7.862 Atomic orbital electron populations 1.69422 1.07098 1.27799 1.43193 1.25594 0.94814 1.00533 0.94125 0.86225 0.79540 0.80569 0.79358 1.19539 1.20827 1.19544 1.18718 0.93843 0.89001 1.44431 0.91154 1.18307 0.90625 0.90243 0.99271 1.23574 0.98993 0.80087 1.18602 1.41411 1.04283 1.07077 1.64868 0.77619 1.16377 0.89050 0.76524 1.19578 1.45289 1.04064 1.03396 1.51540 1.22613 0.94533 0.90241 1.04488 1.21315 0.94374 0.97036 1.17957 1.23890 0.95863 0.94491 1.01732 1.77536 1.04317 1.03672 1.24188 1.21553 0.95489 0.92173 1.14757 0.91710 0.78641 0.81727 0.83764 0.80017 0.85819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.07 10.37 55.53 0.58 -21.49 15 2 C 0.06 1.52 5.49 -17.36 -0.10 1.42 15 3 Si 0.92 19.85 29.56 -169.99 -5.02 14.83 15 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 7 C -0.43 -11.82 9.44 -37.89 -0.36 -12.18 15 8 H 0.07 1.89 7.84 -52.49 -0.41 1.48 15 9 C 0.02 0.58 6.11 -104.82 -0.64 -0.06 15 10 C -0.09 -2.14 10.96 -15.45 -0.17 -2.31 15 11 N -0.57 -12.38 5.87 -11.09 -0.07 -12.45 15 12 H 0.39 6.77 8.59 -40.82 -0.35 6.42 15 13 C 0.18 4.25 7.78 -151.81 -1.18 3.07 15 14 N -0.27 -5.50 3.80 -12.01 -0.05 -5.54 15 15 C 0.03 0.45 11.25 -16.82 -0.19 0.26 15 16 C -0.28 -4.01 10.80 -39.99 -0.43 -4.44 15 17 C 0.02 0.38 12.02 -17.33 -0.21 0.17 15 18 N -0.27 -5.50 12.35 30.64 0.38 -5.12 15 19 C -0.21 -5.34 10.87 -37.24 -0.40 -5.74 15 20 H 0.27 6.60 8.30 -40.82 -0.34 6.26 15 21 H 0.20 5.03 5.77 -52.49 -0.30 4.72 15 22 H 0.17 2.12 7.84 -52.49 -0.41 1.71 15 23 H 0.14 1.59 8.06 -52.49 -0.42 1.16 15 24 H 0.18 2.07 8.06 -52.48 -0.42 1.64 15 25 H 0.12 3.11 8.06 -52.49 -0.42 2.68 15 LS Contribution 230.50 15.07 3.47 3.47 Total: -1.00 -30.15 230.50 -6.26 -36.41 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -1.88 Total: 9.70 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -3.68 Total: -19.81 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.84 Total: -44.61 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -30.15 -6.26 -36.41 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259868178.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.491 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds