Wall clock time and date at job start Mon Mar 30 2020 02:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31087 * 1 3 3 Si 1.86799 * 120.00198 * 2 1 4 4 H 1.48493 * 109.47371 * 240.00492 * 3 2 1 5 5 H 1.48499 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46883 * 120.00131 * 3 2 1 7 7 C 1.39607 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00062 * 179.97438 * 7 2 1 9 9 C 1.41340 * 120.00378 * 359.97438 * 7 2 1 10 10 C 1.39410 * 127.03077 * 359.97423 * 9 7 2 11 11 N 1.35597 * 107.96958 * 180.02562 * 10 9 7 12 12 H 0.97003 * 124.86587 * 180.25753 * 11 10 9 13 13 C 1.36975 * 110.26298 * 0.02562 * 11 10 9 14 14 N 1.39623 * 125.36250 * 179.97438 * 13 11 10 15 15 C 1.35815 * 126.10408 * 0.02562 * 14 13 11 16 16 C 1.35347 * 107.61361 * 179.97438 * 15 14 13 17 17 C 1.39896 * 107.97275 * 0.02562 * 16 15 14 18 18 N 1.30888 * 108.36558 * 359.71468 * 17 16 15 19 19 C 1.35097 * 109.26475 * 359.97438 * 13 11 10 20 20 H 0.97001 * 119.99995 * 359.97438 * 1 2 3 21 21 H 1.07999 * 126.01166 * 0.04397 * 10 9 7 22 22 H 1.07998 * 126.19542 * 0.02562 * 15 14 13 23 23 H 1.08002 * 126.01307 * 179.97438 * 16 15 14 24 24 H 1.08003 * 125.81704 * 180.02562 * 17 16 15 25 25 H 1.08002 * 126.71386 * 180.02562 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2449 1.6177 0.0000 4 1 3.0986 1.6964 -1.2125 5 1 1.2800 2.7464 0.0006 6 1 3.0986 1.6963 1.2125 7 6 2.0089 -1.2091 -0.0005 8 1 3.0889 -1.2091 -0.0010 9 6 1.3022 -2.4331 -0.0005 10 6 -0.0814 -2.6038 0.0005 11 7 -0.3387 -3.9352 0.0006 12 1 -1.2253 -4.3286 -0.0023 13 6 0.8330 -4.6447 0.0004 14 7 0.9343 -6.0373 0.0010 15 6 -0.1020 -6.9151 0.0014 16 6 0.4193 -8.1641 0.0013 17 6 1.8136 -8.0500 0.0014 18 7 2.1232 -6.7783 -0.0046 19 6 1.8749 -3.7847 -0.0006 20 1 -0.4850 0.8401 0.0004 21 1 -0.8186 -1.8145 0.0007 22 1 -1.1520 -6.6623 0.0010 23 1 -0.1424 -9.0867 0.0020 24 1 2.5150 -8.8713 0.0010 25 1 2.9239 -4.0415 -0.0014 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259868178.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:57 Heat of formation + Delta-G solvation = 105.562388 kcal Electronic energy + Delta-G solvation = -12094.348644 eV Core-core repulsion = 9881.744729 eV Total energy + Delta-G solvation = -2212.603915 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.36364 -40.69030 -35.48258 -33.40872 -31.89643 -30.95232 -28.62900 -26.66658 -23.29468 -22.29649 -21.22670 -20.37359 -19.82110 -17.84670 -16.85322 -16.27394 -16.04186 -15.23805 -14.66908 -14.41450 -14.26797 -13.76778 -13.63949 -13.13135 -12.88436 -12.69133 -11.78374 -11.70669 -11.66064 -11.30245 -10.95168 -9.98713 -9.40966 -8.38063 -8.28569 -6.07444 0.53464 1.24782 1.41714 1.44512 1.55631 1.91165 2.03340 2.31213 2.33774 2.90713 3.55917 3.78427 4.01327 4.52378 4.75600 4.88742 5.02461 5.10919 5.22285 5.36524 5.55683 5.79222 5.92714 6.11491 6.36148 6.67821 6.89924 7.12276 7.20044 7.30068 8.62590 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.090487 B = 0.007493 C = 0.006937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.364008 B = 3736.101225 C = 4035.623212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.019 3.981 3 Si 0.987 3.013 4 H -0.268 1.268 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.469 4.469 8 H 0.060 0.940 9 C -0.014 4.014 10 C -0.100 4.100 11 N -0.555 5.555 12 H 0.413 0.587 13 C 0.217 3.783 14 N -0.305 5.305 15 C 0.021 3.979 16 C -0.259 4.259 17 C 0.039 3.961 18 N -0.329 5.329 19 C -0.256 4.256 20 H 0.280 0.720 21 H 0.192 0.808 22 H 0.198 0.802 23 H 0.189 0.811 24 H 0.225 0.775 25 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.427 -10.002 0.003 10.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.188 4.188 3 Si 0.810 3.190 4 H -0.193 1.193 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.502 4.502 8 H 0.079 0.921 9 C -0.020 4.020 10 C -0.228 4.228 11 N -0.159 5.159 12 H 0.250 0.750 13 C 0.015 3.985 14 N -0.081 5.081 15 C -0.122 4.122 16 C -0.288 4.288 17 C -0.146 4.146 18 N -0.150 5.150 19 C -0.288 4.288 20 H 0.091 0.909 21 H 0.208 0.792 22 H 0.214 0.786 23 H 0.207 0.793 24 H 0.241 0.759 25 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.812 -8.897 0.000 9.331 hybrid contribution -0.550 -0.031 0.000 0.551 sum -3.362 -8.928 0.000 9.540 Atomic orbital electron populations 1.69477 1.08068 1.29049 1.42632 1.26415 0.95810 1.03493 0.93124 0.85163 0.78353 0.76253 0.79269 1.19267 1.19270 1.19276 1.18976 0.93760 0.90553 1.46946 0.92129 1.18698 0.92034 0.91007 1.00283 1.23298 0.98052 0.81392 1.20025 1.41168 1.05093 1.05944 1.63705 0.75025 1.16274 0.88533 0.78223 1.15504 1.45260 1.05436 1.02334 1.55099 1.23428 0.95383 0.90348 1.03075 1.21903 0.93955 0.97877 1.15049 1.24777 0.97612 0.93938 0.98298 1.77529 1.05439 1.05700 1.26362 1.21470 0.95861 0.92594 1.18835 0.90941 0.79151 0.78556 0.79346 0.75891 0.87014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -45.75 10.37 21.78 0.23 -45.52 15 2 C 0.02 0.99 5.49 85.13 0.47 1.46 15 3 Si 0.99 41.19 29.56 68.60 2.03 43.22 15 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 15 5 H -0.27 -10.46 7.11 99.48 0.71 -9.76 15 6 H -0.27 -10.99 7.11 99.48 0.71 -10.28 15 7 C -0.47 -27.28 9.44 23.36 0.22 -27.05 15 8 H 0.06 3.47 7.84 -2.91 -0.02 3.44 15 9 C -0.01 -0.83 6.11 -19.99 -0.12 -0.95 15 10 C -0.10 -5.17 10.96 84.39 0.92 -4.25 15 11 N -0.55 -23.93 5.87 -188.99 -1.11 -25.04 15 12 H 0.41 13.72 8.59 -92.71 -0.80 12.93 15 13 C 0.22 10.12 7.78 130.49 1.02 11.14 15 14 N -0.30 -12.16 3.80 -191.90 -0.73 -12.88 15 15 C 0.02 0.61 11.25 83.41 0.94 1.55 15 16 C -0.26 -6.26 10.80 22.00 0.24 -6.02 15 17 C 0.04 1.08 12.02 85.24 1.02 2.11 15 18 N -0.33 -12.82 12.35 -56.98 -0.70 -13.52 15 19 C -0.26 -13.82 10.87 23.79 0.26 -13.56 15 20 H 0.28 13.58 8.30 -92.71 -0.77 12.81 15 21 H 0.19 10.06 5.77 -2.91 -0.02 10.05 15 22 H 0.20 4.23 7.84 -2.91 -0.02 4.20 15 23 H 0.19 2.88 8.06 -2.91 -0.02 2.85 15 24 H 0.22 4.02 8.06 -2.91 -0.02 3.99 15 25 H 0.11 6.05 8.06 -2.91 -0.02 6.03 15 Total: -1.00 -68.43 230.50 5.10 -63.33 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.42 Total: 25.99 kcal Atomic # 6 Polarization: -40.55 SS G_CDS: 4.96 Total: -35.58 kcal Atomic # 7 Polarization: -94.65 SS G_CDS: -2.32 Total: -96.96 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -68.43 5.10 -63.33 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259868178.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.896 kcal (2) G-P(sol) polarization free energy of solvation -68.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds