Wall clock time and date at job start Mon Mar 30 2020 02:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30505 * 126.08504 * 2 1 4 4 N 1.39950 * 110.12408 * 179.97438 * 3 2 1 5 5 C 1.37019 * 125.48982 * 180.02562 * 4 3 2 6 6 H 1.07992 * 120.00394 * 179.97438 * 5 4 3 7 7 C 1.38943 * 119.99307 * 0.02562 * 5 4 3 8 8 N 1.31359 * 120.00549 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99552 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47263 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47152 * 119.99679 * 9 7 5 12 12 H 1.48498 * 109.47112 * 239.99608 * 9 7 5 13 13 C 1.37163 * 109.02535 * 0.03774 * 4 3 2 14 14 C 1.39235 * 134.94845 * 179.97438 * 13 4 3 15 15 C 1.37815 * 118.84605 * 179.97438 * 14 13 4 16 16 N 1.32333 * 121.46294 * 359.97438 * 15 14 13 17 17 C 1.31624 * 122.32655 * 0.02562 * 16 15 14 18 18 C 1.39569 * 120.13999 * 0.02562 * 17 16 15 19 19 H 1.09005 * 109.46752 * 270.02626 * 1 2 3 20 20 H 1.08993 * 109.47099 * 30.01819 * 1 2 3 21 21 H 1.08996 * 109.47238 * 150.02326 * 1 2 3 22 22 H 0.97000 * 120.00128 * 180.02562 * 8 7 5 23 23 H 1.07996 * 120.57390 * 0.02815 * 14 13 4 24 24 H 1.07997 * 119.26646 * 180.02562 * 15 14 13 25 25 H 1.08003 * 119.93243 * 179.72204 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2757 1.0547 0.0000 4 7 3.6212 0.6698 0.0006 5 6 4.6928 1.5237 0.0012 6 1 5.6980 1.1289 0.0021 7 6 4.4861 2.8977 0.0019 8 7 3.2635 3.3780 0.0014 9 14 5.9470 4.0619 0.0035 10 1 7.2067 3.2755 0.0045 11 1 5.8987 4.9185 -1.2086 12 1 5.8970 4.9172 1.2164 13 6 3.6945 -0.6998 0.0001 14 6 4.7311 -1.6294 -0.0001 15 6 4.4202 -2.9720 -0.0001 16 7 3.1647 -3.3903 0.0007 17 6 2.1454 -2.5575 0.0009 18 6 2.3664 -1.1794 -0.0001 19 1 -0.3633 0.0005 1.0277 20 1 -0.3633 0.8898 -0.5141 21 1 -0.3633 -0.8902 -0.5134 22 1 3.1192 4.3372 0.0015 23 1 5.7609 -1.3039 0.0006 24 1 5.2190 -3.6989 0.0002 25 1 1.1359 -2.9414 -0.0030 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259925726.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:06 Heat of formation + Delta-G solvation = 71.583078 kcal Electronic energy + Delta-G solvation = -12461.685790 eV Core-core repulsion = 10247.608421 eV Total energy + Delta-G solvation = -2214.077369 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.96826 -38.81771 -35.69535 -33.82814 -31.54466 -30.88870 -29.66273 -26.43778 -24.26898 -23.22924 -21.20132 -19.51394 -18.02225 -17.24542 -16.50989 -16.25284 -15.97516 -15.03998 -14.96804 -14.07694 -13.96801 -13.70120 -13.57970 -13.35419 -12.82953 -12.76454 -12.21217 -12.07413 -11.29616 -11.14497 -10.77809 -10.26311 -9.59751 -9.25378 -8.55642 -6.22064 0.17055 0.78615 1.33540 1.40507 1.51682 1.94450 2.00261 2.48745 2.88422 3.23997 3.76293 3.96058 4.00337 4.17266 4.44132 4.73092 4.77857 4.88440 4.91621 5.09092 5.11638 5.15766 5.38545 5.74221 5.98813 6.08411 6.59274 7.26033 7.31901 7.45780 8.44814 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.039991 B = 0.012107 C = 0.009341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.986117 B = 2312.107686 C = 2996.949635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C 0.008 3.992 3 N -0.252 5.252 4 N -0.205 5.205 5 C -0.356 4.356 6 H 0.126 0.874 7 C -0.004 4.004 8 N -0.827 5.827 9 Si 1.015 2.985 10 H -0.249 1.249 11 H -0.268 1.268 12 H -0.268 1.268 13 C 0.036 3.964 14 C -0.187 4.187 15 C 0.085 3.915 16 N -0.544 5.544 17 C 0.188 3.812 18 C -0.268 4.268 19 H 0.082 0.918 20 H 0.064 0.936 21 H 0.100 0.900 22 H 0.278 0.722 23 H 0.129 0.871 24 H 0.182 0.818 25 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.090 -4.700 -0.003 4.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.162 4.162 3 N -0.074 5.074 4 N 0.025 4.975 5 C -0.486 4.486 6 H 0.144 0.856 7 C -0.214 4.214 8 N -0.456 5.456 9 Si 0.834 3.166 10 H -0.172 1.172 11 H -0.193 1.193 12 H -0.193 1.193 13 C -0.091 4.091 14 C -0.211 4.211 15 C -0.061 4.061 16 N -0.257 5.257 17 C 0.019 3.981 18 C -0.281 4.281 19 H 0.101 0.899 20 H 0.083 0.917 21 H 0.119 0.881 22 H 0.088 0.912 23 H 0.147 0.853 24 H 0.199 0.801 25 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.167 -4.018 -0.004 4.021 hybrid contribution 0.847 1.006 0.011 1.316 sum 0.680 -3.012 0.007 3.088 Atomic orbital electron populations 1.20090 0.83680 1.03680 1.03329 1.24322 0.98402 0.88637 1.04846 1.77514 0.86936 1.22416 1.20503 1.44716 1.04114 1.01801 1.46846 1.20396 0.85715 0.88176 1.54296 0.85639 1.26715 1.01378 0.99010 0.94321 1.70338 1.22350 1.14663 1.38217 0.84585 0.76433 0.76959 0.78591 1.17225 1.19296 1.19312 1.19506 0.97291 0.85554 1.06759 1.21061 0.97728 0.92995 1.09355 1.22612 0.94299 0.92506 0.96728 1.67657 0.99964 1.38662 1.19404 1.22550 0.99081 0.86095 0.90358 1.20803 0.92263 0.96344 1.18647 0.89939 0.91669 0.88130 0.91193 0.85263 0.80142 0.79990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.64 10.48 71.24 0.75 -0.89 15 2 C 0.01 0.35 7.44 44.75 0.33 0.69 15 3 N -0.25 -14.23 10.18 -43.57 -0.44 -14.67 15 4 N -0.21 -11.66 3.73 -183.86 -0.69 -12.34 15 5 C -0.36 -19.60 10.17 84.05 0.85 -18.75 15 6 H 0.13 6.34 7.83 -2.91 -0.02 6.32 15 7 C 0.00 -0.19 5.50 84.93 0.47 0.28 15 8 N -0.83 -46.47 11.76 21.66 0.25 -46.22 15 9 Si 1.02 39.26 29.55 68.60 2.03 41.28 15 10 H -0.25 -8.95 7.11 99.48 0.71 -8.24 15 11 H -0.27 -10.04 7.11 99.48 0.71 -9.34 15 12 H -0.27 -10.05 7.11 99.48 0.71 -9.34 15 13 C 0.04 1.83 6.85 39.28 0.27 2.10 15 14 C -0.19 -7.95 10.08 22.41 0.23 -7.73 15 15 C 0.09 3.13 11.15 84.52 0.94 4.07 15 16 N -0.54 -20.69 10.33 -194.91 -2.01 -22.70 15 17 C 0.19 7.12 11.28 85.05 0.96 8.08 15 18 C -0.27 -12.28 6.37 -20.24 -0.13 -12.41 15 19 H 0.08 2.43 8.14 -2.38 -0.02 2.42 15 20 H 0.06 2.17 8.14 -2.39 -0.02 2.15 15 21 H 0.10 2.59 8.14 -2.39 -0.02 2.57 15 22 H 0.28 14.25 8.31 -92.71 -0.77 13.48 15 23 H 0.13 5.01 8.06 -2.91 -0.02 4.99 15 24 H 0.18 5.01 8.06 -2.91 -0.02 4.99 15 25 H 0.18 5.23 8.06 -2.91 -0.02 5.21 15 Total: -1.00 -69.01 230.91 5.01 -64.01 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 1.20 Total: 15.20 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 4.67 Total: -24.55 kcal Atomic # 7 Polarization: -93.05 SS G_CDS: -2.89 Total: -95.94 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.28 kcal Total: -69.01 5.01 -64.01 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925726.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.590 kcal (2) G-P(sol) polarization free energy of solvation -69.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds