Wall clock time and date at job start Mon Mar 30 2020 02:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39796 * 125.19993 * 2 1 4 4 C 1.32610 * 109.70581 * 179.97438 * 3 2 1 5 5 C 1.40783 * 126.41736 * 180.02562 * 4 3 2 6 6 H 1.07997 * 120.00406 * 179.97438 * 5 4 3 7 7 C 1.40006 * 119.99645 * 359.97009 * 5 4 3 8 8 N 1.30830 * 120.00581 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99848 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46972 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46963 * 120.00427 * 9 7 5 12 12 H 1.48504 * 109.47267 * 240.00392 * 9 7 5 13 13 C 1.47216 * 107.16719 * 359.97438 * 4 3 2 14 14 C 1.39468 * 134.03795 * 180.02562 * 13 4 3 15 15 C 1.38314 * 118.09572 * 180.25455 * 14 13 4 16 16 C 1.38659 * 119.39539 * 359.46626 * 15 14 13 17 17 N 1.31564 * 121.48662 * 0.57277 * 16 15 14 18 18 C 1.32733 * 121.65173 * 359.69835 * 17 16 15 19 19 H 1.09004 * 109.47123 * 89.97590 * 1 2 3 20 20 H 1.08991 * 109.47710 * 209.97925 * 1 2 3 21 21 H 1.09006 * 109.47139 * 329.98305 * 1 2 3 22 22 H 0.96996 * 120.00218 * 180.02562 * 8 7 5 23 23 H 1.08002 * 120.94817 * 359.97438 * 14 13 4 24 24 H 1.08003 * 120.30303 * 179.74650 * 15 14 13 25 25 H 1.08005 * 119.25347 * 180.27706 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2708 1.1423 0.0000 4 6 3.5487 0.7881 0.0006 5 6 4.6568 1.6565 0.0012 6 1 5.6588 1.2536 0.0021 7 6 4.4597 3.0427 0.0008 8 7 3.2459 3.5309 0.0002 9 14 5.9299 4.1951 0.0024 10 1 7.1832 3.3985 0.0035 11 1 5.8891 5.0512 -1.2103 12 1 5.8862 5.0516 1.2148 13 6 3.5917 -0.6834 0.0016 14 6 4.6222 -1.6233 0.0029 15 6 4.2813 -2.9637 -0.0018 16 6 2.9428 -3.3256 0.0036 17 7 1.9866 -2.4219 0.0019 18 6 2.2565 -1.1223 0.0009 19 1 -0.3633 0.0004 -1.0277 20 1 -0.3634 -0.8901 0.5134 21 1 -0.3634 0.8899 0.5141 22 1 3.1094 4.4912 -0.0005 23 1 5.6567 -1.3131 0.0030 24 1 5.0507 -3.7217 -0.0051 25 1 2.6792 -4.3730 0.0044 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259943423.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:36 Heat of formation + Delta-G solvation = 68.400858 kcal Electronic energy + Delta-G solvation = -12407.807150 eV Core-core repulsion = 10193.591790 eV Total energy + Delta-G solvation = -2214.215360 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.65802 -38.34538 -35.76056 -33.91438 -32.04475 -30.39411 -29.13247 -26.14712 -24.29248 -22.93057 -21.65588 -18.94661 -17.63396 -17.30689 -16.87902 -16.32193 -16.19788 -14.85705 -14.67660 -14.16770 -14.01649 -13.47617 -13.24028 -13.16553 -12.80369 -12.56522 -12.51212 -11.86309 -11.32049 -10.88013 -10.71015 -10.13635 -9.46882 -8.91587 -8.51399 -6.53925 0.33074 0.66847 1.39917 1.43787 1.60945 2.02358 2.17462 2.26190 3.04553 3.47572 3.68175 3.92555 4.18007 4.37638 4.41996 4.49172 4.62963 4.64649 4.99062 5.11977 5.18420 5.42320 5.56181 5.96291 6.25517 6.48742 6.70168 6.90391 7.23553 7.79825 8.46473 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.041481 B = 0.011593 C = 0.009105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.847440 B = 2414.770759 C = 3074.473259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.439 5.439 3 N -0.353 5.353 4 C 0.194 3.806 5 C -0.454 4.454 6 H 0.101 0.899 7 C 0.020 3.980 8 N -0.801 5.801 9 Si 0.999 3.001 10 H -0.246 1.246 11 H -0.269 1.269 12 H -0.269 1.269 13 C -0.264 4.264 14 C -0.006 4.006 15 C -0.238 4.238 16 C 0.145 3.855 17 N -0.546 5.546 18 C 0.283 3.717 19 H 0.059 0.941 20 H 0.086 0.914 21 H 0.075 0.925 22 H 0.283 0.717 23 H 0.143 0.857 24 H 0.173 0.827 25 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.943 -7.139 0.113 7.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.227 5.227 3 N -0.178 5.178 4 C 0.037 3.963 5 C -0.494 4.494 6 H 0.119 0.881 7 C -0.198 4.198 8 N -0.428 5.428 9 Si 0.819 3.181 10 H -0.169 1.169 11 H -0.194 1.194 12 H -0.194 1.194 13 C -0.275 4.275 14 C -0.034 4.034 15 C -0.261 4.261 16 C -0.021 4.021 17 N -0.264 5.264 18 C 0.042 3.958 19 H 0.077 0.923 20 H 0.104 0.896 21 H 0.094 0.906 22 H 0.093 0.907 23 H 0.161 0.839 24 H 0.191 0.809 25 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.832 -6.199 0.113 6.256 hybrid contribution 1.351 0.390 -0.025 1.406 sum 2.183 -5.809 0.088 6.206 Atomic orbital electron populations 1.21471 0.74903 1.03189 1.02001 1.48955 1.06519 1.01076 1.66179 1.78410 1.01615 1.00281 1.37480 1.20830 0.92758 0.89040 0.93642 1.19136 0.92407 0.90744 1.47097 0.88106 1.27019 1.00164 1.00464 0.92112 1.70042 1.24247 1.14823 1.33696 0.84896 0.77525 0.77151 0.78527 1.16915 1.19380 1.19360 1.21156 0.95211 0.95734 1.15362 1.21264 0.98466 0.92344 0.91311 1.22066 0.98415 0.95639 1.09950 1.23234 0.88509 0.98821 0.91520 1.66721 1.39445 0.98587 1.21677 1.19625 0.89920 0.88496 0.97740 0.92283 0.89576 0.90618 0.90714 0.83886 0.80917 0.78631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.14 11.43 127.77 1.46 6.60 15 2 N -0.44 -23.10 4.05 -366.48 -1.48 -24.59 15 3 N -0.35 -21.24 10.69 -48.60 -0.52 -21.75 15 4 C 0.19 11.31 6.93 42.01 0.29 11.60 15 5 C -0.45 -24.96 9.41 23.32 0.22 -24.74 15 6 H 0.10 5.01 7.85 -2.91 -0.02 4.99 15 7 C 0.02 1.07 5.50 85.27 0.47 1.54 15 8 N -0.80 -45.13 11.95 21.84 0.26 -44.87 15 9 Si 1.00 38.49 29.56 68.60 2.03 40.52 15 10 H -0.25 -8.81 7.11 99.48 0.71 -8.10 15 11 H -0.27 -10.03 7.11 99.48 0.71 -9.33 15 12 H -0.27 -10.02 7.11 99.48 0.71 -9.31 15 13 C -0.26 -13.46 6.32 -20.06 -0.13 -13.58 15 14 C -0.01 -0.25 10.22 22.58 0.23 -0.02 15 15 C -0.24 -7.41 10.10 22.39 0.23 -7.18 15 16 C 0.15 4.74 11.15 84.83 0.95 5.69 15 17 N -0.55 -23.22 10.39 -192.97 -2.00 -25.23 15 18 C 0.28 14.20 7.94 133.87 1.06 15.26 15 19 H 0.06 2.21 8.14 -2.39 -0.02 2.19 15 20 H 0.09 3.08 8.14 -2.39 -0.02 3.06 15 21 H 0.08 2.97 8.14 -2.38 -0.02 2.95 15 22 H 0.28 14.36 8.30 -92.71 -0.77 13.59 15 23 H 0.14 4.97 8.06 -2.91 -0.02 4.94 15 24 H 0.17 3.63 8.06 -2.91 -0.02 3.60 15 25 H 0.20 4.28 8.06 -2.91 -0.02 4.25 15 Total: -1.00 -72.16 231.69 4.26 -67.90 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 1.20 Total: 12.85 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 4.78 Total: -4.83 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -3.75 Total: -116.43 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Total: -72.16 4.26 -67.90 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259943423.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.297 kcal (2) G-P(sol) polarization free energy of solvation -72.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds