Wall clock time and date at job start Mon Mar 30 2020 02:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00307 * 2 1 4 4 H 1.48500 * 109.47183 * 240.00628 * 3 2 1 5 5 H 1.48502 * 109.47035 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47215 * 120.00449 * 3 2 1 7 7 C 1.37885 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99366 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.50704 * 109.46813 * 180.02562 * 9 7 2 11 11 C 1.38664 * 125.50401 * 125.02613 * 10 9 7 12 12 C 1.38861 * 107.64587 * 180.02562 * 11 10 9 13 13 N 1.33985 * 132.57147 * 179.97438 * 12 11 10 14 14 C 1.31218 * 120.80648 * 179.77449 * 13 12 11 15 15 C 1.40241 * 120.28500 * 0.50714 * 14 13 12 16 16 C 1.35526 * 119.44974 * 359.48010 * 15 14 13 17 17 N 1.36519 * 119.12477 * 0.26065 * 16 15 14 18 18 N 1.31417 * 125.50266 * 305.02629 * 10 9 7 19 19 H 0.96999 * 120.00073 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.46891 * 60.00463 * 9 7 2 21 21 H 1.08995 * 109.47170 * 299.99947 * 9 7 2 22 22 H 1.08001 * 126.17669 * 359.96275 * 11 10 9 23 23 H 1.08003 * 119.85624 * 180.26451 * 14 13 12 24 24 H 1.08002 * 120.27816 * 179.76691 * 15 14 13 25 25 H 1.08004 * 120.43611 * 180.27785 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6447 -0.0005 11 6 2.2610 -4.6778 0.9239 12 6 3.3060 -5.5233 0.5755 13 7 3.7752 -6.6553 1.1173 14 6 4.7969 -7.2825 0.5839 15 6 5.4228 -6.7688 -0.5612 16 6 4.9569 -5.6247 -1.1186 17 7 3.8893 -4.9941 -0.5475 18 7 3.1928 -3.8258 -0.8766 19 1 -0.4850 0.8400 0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 1.5935 -4.8018 1.7638 23 1 5.1599 -8.1962 1.0310 24 1 6.2661 -7.2832 -0.9979 25 1 5.4240 -5.2174 -2.0031 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259962443.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:30 Heat of formation + Delta-G solvation = 88.115219 kcal Electronic energy + Delta-G solvation = -12049.835394 eV Core-core repulsion = 9836.474912 eV Total energy + Delta-G solvation = -2213.360481 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.15820 -39.05747 -35.56604 -34.78745 -32.66114 -30.27632 -29.64351 -25.96630 -25.10607 -23.57139 -21.32800 -19.00713 -18.67353 -17.81745 -16.94204 -16.88535 -16.40186 -15.31132 -14.69930 -14.48200 -14.09458 -14.03021 -13.57938 -13.29163 -12.74395 -12.67452 -12.18480 -11.98910 -11.86210 -11.46274 -10.76169 -10.62545 -10.18556 -8.87526 -8.23823 -6.34809 -0.26589 -0.00266 1.28129 1.38453 1.42417 1.50378 1.71573 2.40647 2.54232 2.97890 3.08830 3.25059 3.66033 4.13510 4.26927 4.49039 4.53507 4.75357 4.85632 5.15738 5.21350 5.32623 5.50556 5.66263 5.80319 6.09365 6.62326 6.71847 6.74199 7.32166 8.87471 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.065596 B = 0.007655 C = 0.007201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.750570 B = 3657.065731 C = 3887.184151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.269 1.269 7 C -0.530 4.530 8 H 0.049 0.951 9 C 0.094 3.906 10 C 0.135 3.865 11 C -0.299 4.299 12 C 0.242 3.758 13 N -0.499 5.499 14 C 0.182 3.818 15 C -0.206 4.206 16 C 0.134 3.866 17 N -0.327 5.327 18 N -0.343 5.343 19 H 0.269 0.731 20 H 0.020 0.980 21 H 0.032 0.968 22 H 0.158 0.842 23 H 0.229 0.771 24 H 0.222 0.778 25 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.548 -14.329 -1.144 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.569 4.569 8 H 0.067 0.933 9 C 0.056 3.944 10 C -0.022 4.022 11 C -0.329 4.329 12 C 0.015 3.985 13 N -0.212 5.212 14 C -0.001 4.001 15 C -0.229 4.229 16 C 0.001 3.999 17 N -0.098 5.098 18 N -0.169 5.169 19 H 0.077 0.923 20 H 0.038 0.962 21 H 0.050 0.950 22 H 0.176 0.824 23 H 0.245 0.755 24 H 0.239 0.761 25 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 12.325 -13.816 -1.448 18.571 hybrid contribution -0.095 1.025 0.015 1.030 sum 12.230 -12.791 -1.433 17.755 Atomic orbital electron populations 1.70044 1.07453 1.28291 1.50747 1.25870 0.95860 1.02956 0.94303 0.85444 0.78314 0.77968 0.78962 1.19566 1.19919 1.19430 1.21185 0.92831 0.91065 1.51787 0.93317 1.17658 0.91189 0.88256 0.97324 1.22857 0.93482 0.95140 0.90741 1.21061 1.05679 0.98451 1.07744 1.20692 0.96238 0.93518 0.88091 1.68305 1.16021 1.05514 1.31371 1.24408 0.86830 0.98089 0.90794 1.22412 1.05424 0.95974 0.99092 1.22937 0.84926 0.92906 0.99129 1.47582 1.22914 1.18469 1.20813 1.77880 1.12603 1.00256 1.26207 0.92252 0.96214 0.94983 0.82397 0.75525 0.76113 0.78229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.29 21.45 0.28 -56.23 15 2 C 0.01 0.52 5.46 84.66 0.46 0.98 15 3 Si 0.97 45.71 29.54 68.60 2.03 47.74 15 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 15 5 H -0.27 -12.32 7.11 99.48 0.71 -11.61 15 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 15 7 C -0.53 -32.06 9.06 25.60 0.23 -31.83 15 8 H 0.05 2.97 7.74 -2.91 -0.02 2.95 15 9 C 0.09 5.41 5.54 29.10 0.16 5.57 15 10 C 0.14 6.93 6.38 42.72 0.27 7.20 15 11 C -0.30 -13.58 10.81 22.52 0.24 -13.34 15 12 C 0.24 9.56 7.92 133.13 1.05 10.61 15 13 N -0.50 -15.41 10.48 -192.55 -2.02 -17.43 15 14 C 0.18 3.22 11.27 85.27 0.96 4.18 15 15 C -0.21 -2.90 10.05 22.13 0.22 -2.68 15 16 C 0.13 3.20 11.30 83.34 0.94 4.14 15 17 N -0.33 -12.50 3.90 -192.51 -0.75 -13.26 15 18 N -0.34 -16.66 12.61 -47.84 -0.60 -17.26 15 19 H 0.27 15.29 8.31 -92.71 -0.77 14.52 15 20 H 0.02 1.20 8.14 -2.39 -0.02 1.18 15 21 H 0.03 1.86 8.11 -2.39 -0.02 1.84 15 22 H 0.16 6.69 8.06 -2.91 -0.02 6.67 15 23 H 0.23 1.42 8.06 -2.91 -0.02 1.39 15 24 H 0.22 0.45 8.06 -2.91 -0.02 0.43 15 25 H 0.20 3.41 8.06 -2.91 -0.02 3.39 15 Total: -1.00 -78.87 233.46 4.68 -74.18 By element: Atomic # 1 Polarization: -3.78 SS G_CDS: 1.20 Total: -2.58 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: 4.55 Total: -15.16 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -3.09 Total: -104.18 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -78.87 4.68 -74.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259962443.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.299 kcal (2) G-P(sol) polarization free energy of solvation -78.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds