Wall clock time and date at job start Mon Mar 30 2020 02:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.38488 * 125.51529 * 2 1 4 4 C 1.39874 * 125.70014 * 359.95872 * 3 2 1 5 5 H 1.07997 * 120.00122 * 17.32677 * 4 3 2 6 6 C 1.40214 * 120.00146 * 197.31839 * 4 3 2 7 7 N 1.30736 * 119.99691 * 10.11245 * 6 4 3 8 8 Si 1.86794 * 120.00395 * 190.11009 * 6 4 3 9 9 H 1.48499 * 109.47194 * 265.04144 * 8 6 4 10 10 H 1.48504 * 109.47239 * 25.03584 * 8 6 4 11 11 H 1.48498 * 109.47562 * 145.03906 * 8 6 4 12 12 C 1.39204 * 108.59592 * 180.21843 * 3 2 1 13 13 C 1.40691 * 107.29936 * 359.61916 * 12 3 2 14 14 C 1.40285 * 134.27413 * 180.02562 * 13 12 3 15 15 N 1.32129 * 118.48527 * 180.33893 * 14 13 12 16 16 C 1.32173 * 121.26322 * 0.02562 * 15 14 13 17 17 N 1.31705 * 122.68762 * 359.97438 * 16 15 14 18 18 C 1.32803 * 120.64035 * 0.04613 * 17 16 15 19 19 H 1.09002 * 109.47240 * 89.99405 * 1 2 3 20 20 H 1.09004 * 109.47500 * 210.00021 * 1 2 3 21 21 H 1.09002 * 109.47123 * 329.99692 * 1 2 3 22 22 H 0.96999 * 120.00122 * 180.02562 * 7 6 4 23 23 H 1.08003 * 126.35210 * 179.72136 * 12 3 2 24 24 H 1.07997 * 120.75156 * 0.35700 * 14 13 12 25 25 H 1.07994 * 118.65165 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2694 1.1272 0.0000 4 6 1.8190 2.4515 -0.0008 5 1 0.7997 2.6753 0.2770 6 6 2.6910 3.4884 -0.3622 7 7 3.8562 3.2100 -0.8856 8 14 2.1878 5.2674 -0.0959 9 1 1.5950 5.8066 -1.3461 10 1 1.1862 5.3402 0.9981 11 1 3.3818 6.0699 0.2719 12 6 3.6012 0.7221 -0.0050 13 6 3.6106 -0.6847 0.0008 14 6 4.6215 -1.6574 0.0001 15 7 4.2705 -2.9312 0.0002 16 6 2.9990 -3.2923 0.0002 17 7 2.0119 -2.4203 0.0008 18 6 2.2612 -1.1159 0.0004 19 1 -0.3634 0.0001 -1.0277 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5139 22 1 4.4596 3.9272 -1.1353 23 1 4.4668 1.3680 -0.0105 24 1 5.6629 -1.3714 0.0000 25 1 2.7598 -4.3454 0.0007 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259971946.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:02 Heat of formation + Delta-G solvation = 67.398067 kcal Electronic energy + Delta-G solvation = -12456.653590 eV Core-core repulsion = 10242.394745 eV Total energy + Delta-G solvation = -2214.258844 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.42395 -37.47771 -33.97783 -32.38623 -31.29811 -28.93746 -26.46309 -25.26282 -22.40596 -21.41262 -19.64941 -17.44782 -16.63894 -15.89047 -15.30148 -14.62294 -14.24498 -13.38470 -12.99024 -12.71788 -12.52981 -12.21527 -11.78331 -11.50379 -11.30043 -10.98806 -10.74577 -10.38260 -9.84939 -9.56778 -9.36257 -8.06224 -7.77654 -7.03464 -6.87504 -4.60956 2.02008 2.55312 2.85492 2.91242 2.95841 3.58298 3.83580 3.88763 4.93258 5.17930 5.29163 5.44247 5.60638 5.94560 6.01714 6.11799 6.32230 6.47297 6.77638 7.18804 7.30664 7.34949 7.41236 7.88398 8.11646 8.30579 8.46530 8.62200 8.77121 9.40057 9.90611 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.055371 B = 0.010451 C = 0.008910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.559123 B = 2678.521851 C = 3141.929797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.495 5.495 3 C 0.280 3.720 4 C -0.441 4.441 5 H 0.084 0.916 6 C 0.077 3.923 7 N -0.769 5.769 8 Si 0.928 3.072 9 H -0.268 1.268 10 H -0.259 1.259 11 H -0.271 1.271 12 C -0.295 4.295 13 C -0.130 4.130 14 C 0.103 3.897 15 N -0.532 5.532 16 C 0.205 3.795 17 N -0.524 5.524 18 C 0.256 3.744 19 H 0.054 0.946 20 H 0.068 0.932 21 H 0.075 0.925 22 H 0.287 0.713 23 H 0.151 0.849 24 H 0.147 0.853 25 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.771 1.253 0.990 3.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.189 5.189 3 C 0.175 3.825 4 C -0.473 4.473 5 H 0.102 0.898 6 C -0.145 4.145 7 N -0.392 5.392 8 Si 0.751 3.249 9 H -0.193 1.193 10 H -0.183 1.183 11 H -0.196 1.196 12 C -0.319 4.319 13 C -0.140 4.140 14 C -0.067 4.067 15 N -0.248 5.248 16 C -0.081 4.081 17 N -0.244 5.244 18 C 0.014 3.986 19 H 0.073 0.927 20 H 0.086 0.914 21 H 0.094 0.906 22 H 0.098 0.902 23 H 0.168 0.832 24 H 0.164 0.836 25 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.138 0.334 0.891 3.279 hybrid contribution -0.111 1.582 0.006 1.586 sum -3.249 1.916 0.897 3.877 Atomic orbital electron populations 1.21569 0.78709 1.02532 1.01650 1.44070 1.04893 1.03627 1.66301 1.18208 0.88109 0.84856 0.91349 1.18714 0.99304 0.88426 1.40887 0.89793 1.25851 0.94186 1.02129 0.92345 1.69781 1.07271 1.35719 1.26450 0.85971 0.79444 0.79705 0.79781 1.19270 1.18280 1.19612 1.20978 0.96243 0.89964 1.24727 1.19792 0.93710 0.97015 1.03488 1.22273 0.98218 0.86828 0.99367 1.67915 1.21051 1.19593 1.16204 1.23650 0.83330 0.97673 1.03470 1.66889 1.39127 1.00481 1.17867 1.18431 0.88990 0.86742 1.04415 0.92723 0.91369 0.90649 0.90196 0.83156 0.83586 0.81095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.84 10.90 59.84 0.65 2.49 15 2 N -0.49 -11.83 3.22 -120.67 -0.39 -12.21 15 3 C 0.28 7.12 6.55 -83.89 -0.55 6.57 15 4 C -0.44 -10.55 8.94 -38.23 -0.34 -10.89 15 5 H 0.08 1.85 7.06 -52.49 -0.37 1.48 15 6 C 0.08 1.75 5.42 -17.28 -0.09 1.66 15 7 N -0.77 -18.25 10.77 55.56 0.60 -17.65 15 8 Si 0.93 16.76 29.57 -169.99 -5.03 11.74 15 9 H -0.27 -4.78 7.11 56.52 0.40 -4.38 15 10 H -0.26 -4.62 7.11 56.52 0.40 -4.22 15 11 H -0.27 -4.83 7.11 56.52 0.40 -4.43 15 12 C -0.30 -7.70 9.67 -38.30 -0.37 -8.07 15 13 C -0.13 -3.30 6.20 -106.90 -0.66 -3.96 15 14 C 0.10 2.37 11.41 -16.65 -0.19 2.18 15 15 N -0.53 -12.00 10.42 -14.13 -0.15 -12.15 15 16 C 0.20 4.48 12.24 -91.90 -1.12 3.35 15 17 N -0.52 -12.43 10.47 -13.61 -0.14 -12.58 15 18 C 0.26 6.44 7.95 -155.54 -1.24 5.20 15 19 H 0.05 0.96 8.14 -51.93 -0.42 0.53 15 20 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 21 H 0.07 1.28 7.20 -51.93 -0.37 0.90 15 22 H 0.29 6.10 8.29 -40.82 -0.34 5.76 15 23 H 0.15 3.96 6.34 -52.48 -0.33 3.63 15 24 H 0.15 2.93 8.06 -52.49 -0.42 2.50 15 25 H 0.17 3.06 8.06 -52.49 -0.42 2.63 15 LS Contribution 226.32 15.07 3.41 3.41 Total: -1.00 -28.20 226.32 -7.52 -35.71 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -1.90 Total: 5.20 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -3.92 Total: -1.47 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.08 Total: -54.59 kcal Atomic # 14 Polarization: 16.76 SS G_CDS: -5.03 Total: 11.74 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -28.20 -7.52 -35.71 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259971946.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.109 kcal (2) G-P(sol) polarization free energy of solvation -28.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds