Wall clock time and date at job start Mon Mar 30 2020 02:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.38488 * 125.51529 * 2 1 4 4 C 1.39874 * 125.70014 * 359.95872 * 3 2 1 5 5 H 1.07997 * 120.00122 * 17.32677 * 4 3 2 6 6 C 1.40214 * 120.00146 * 197.31839 * 4 3 2 7 7 N 1.30736 * 119.99691 * 10.11245 * 6 4 3 8 8 Si 1.86794 * 120.00395 * 190.11009 * 6 4 3 9 9 H 1.48499 * 109.47194 * 265.04144 * 8 6 4 10 10 H 1.48504 * 109.47239 * 25.03584 * 8 6 4 11 11 H 1.48498 * 109.47562 * 145.03906 * 8 6 4 12 12 C 1.39204 * 108.59592 * 180.21843 * 3 2 1 13 13 C 1.40691 * 107.29936 * 359.61916 * 12 3 2 14 14 C 1.40285 * 134.27413 * 180.02562 * 13 12 3 15 15 N 1.32129 * 118.48527 * 180.33893 * 14 13 12 16 16 C 1.32173 * 121.26322 * 0.02562 * 15 14 13 17 17 N 1.31705 * 122.68762 * 359.97438 * 16 15 14 18 18 C 1.32803 * 120.64035 * 0.04613 * 17 16 15 19 19 H 1.09002 * 109.47240 * 89.99405 * 1 2 3 20 20 H 1.09004 * 109.47500 * 210.00021 * 1 2 3 21 21 H 1.09002 * 109.47123 * 329.99692 * 1 2 3 22 22 H 0.96999 * 120.00122 * 180.02562 * 7 6 4 23 23 H 1.08003 * 126.35210 * 179.72136 * 12 3 2 24 24 H 1.07997 * 120.75156 * 0.35700 * 14 13 12 25 25 H 1.07994 * 118.65165 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2694 1.1272 0.0000 4 6 1.8190 2.4515 -0.0008 5 1 0.7997 2.6753 0.2770 6 6 2.6910 3.4884 -0.3622 7 7 3.8562 3.2100 -0.8856 8 14 2.1878 5.2674 -0.0959 9 1 1.5950 5.8066 -1.3461 10 1 1.1862 5.3402 0.9981 11 1 3.3818 6.0699 0.2719 12 6 3.6012 0.7221 -0.0050 13 6 3.6106 -0.6847 0.0008 14 6 4.6215 -1.6574 0.0001 15 7 4.2705 -2.9312 0.0002 16 6 2.9990 -3.2923 0.0002 17 7 2.0119 -2.4203 0.0008 18 6 2.2612 -1.1159 0.0004 19 1 -0.3634 0.0001 -1.0277 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5139 22 1 4.4596 3.9272 -1.1353 23 1 4.4668 1.3680 -0.0105 24 1 5.6629 -1.3714 0.0000 25 1 2.7598 -4.3454 0.0007 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259971946.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:02 Heat of formation + Delta-G solvation = 52.049902 kcal Electronic energy + Delta-G solvation = -12457.319136 eV Core-core repulsion = 10242.394745 eV Total energy + Delta-G solvation = -2214.924391 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.22913 -39.26016 -35.72718 -34.18850 -33.03771 -30.74023 -28.19543 -26.99594 -24.20085 -23.20097 -21.48106 -19.22485 -18.39196 -17.66592 -17.01265 -16.37919 -15.86414 -15.07150 -14.66533 -14.43345 -14.23086 -13.95740 -13.43090 -13.04416 -12.92774 -12.60796 -12.38878 -11.95418 -11.61291 -11.40077 -11.09120 -9.88293 -9.59746 -8.74578 -8.71877 -6.45840 0.21523 0.71689 1.40293 1.44101 1.59499 1.95201 2.12618 2.24224 3.15049 3.33714 3.63689 3.71082 3.98588 4.30929 4.47969 4.51023 4.66787 4.79230 5.04884 5.35290 5.50975 5.59499 5.61745 6.00378 6.28271 6.47947 6.62875 6.79648 6.96863 7.59202 8.23130 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.055371 B = 0.010451 C = 0.008910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.559123 B = 2678.521851 C = 3141.929797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.500 5.500 3 C 0.259 3.741 4 C -0.461 4.461 5 H 0.099 0.901 6 C 0.037 3.963 7 N -0.801 5.801 8 Si 1.005 2.995 9 H -0.261 1.261 10 H -0.252 1.252 11 H -0.267 1.267 12 C -0.326 4.326 13 C -0.159 4.159 14 C 0.105 3.895 15 N -0.535 5.535 16 C 0.210 3.790 17 N -0.532 5.532 18 C 0.235 3.765 19 H 0.065 0.935 20 H 0.079 0.921 21 H 0.092 0.908 22 H 0.295 0.705 23 H 0.137 0.863 24 H 0.170 0.830 25 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.610 1.604 1.149 4.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.194 5.194 3 C 0.154 3.846 4 C -0.493 4.493 5 H 0.117 0.883 6 C -0.182 4.182 7 N -0.425 5.425 8 Si 0.824 3.176 9 H -0.185 1.185 10 H -0.175 1.175 11 H -0.191 1.191 12 C -0.350 4.350 13 C -0.169 4.169 14 C -0.065 4.065 15 N -0.251 5.251 16 C -0.077 4.077 17 N -0.252 5.252 18 C -0.006 4.006 19 H 0.084 0.916 20 H 0.098 0.902 21 H 0.111 0.889 22 H 0.107 0.893 23 H 0.154 0.846 24 H 0.187 0.813 25 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -3.996 0.668 1.048 4.184 hybrid contribution 0.190 1.352 -0.063 1.367 sum -3.806 2.020 0.984 4.420 Atomic orbital electron populations 1.21829 0.76152 1.03973 1.02826 1.44319 1.06498 1.02852 1.65764 1.18540 0.88412 0.85920 0.91771 1.19135 1.00440 0.88370 1.41368 0.88309 1.26886 0.93768 1.06335 0.91247 1.69850 1.08389 1.37587 1.26688 0.84835 0.79189 0.73680 0.79907 1.18541 1.17540 1.19134 1.20920 0.96535 0.90420 1.27134 1.20058 0.94829 0.97161 1.04817 1.22697 0.99072 0.86765 0.97960 1.68043 1.21431 1.19045 1.16578 1.24584 0.82944 0.99233 1.00896 1.67016 1.39625 0.99960 1.18636 1.18765 0.89384 0.87564 1.04895 0.91609 0.90214 0.88928 0.89344 0.84557 0.81306 0.77020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.39 10.90 127.77 1.39 4.78 15 2 N -0.50 -23.90 3.22 -535.70 -1.72 -25.62 15 3 C 0.26 13.37 6.55 38.72 0.25 13.63 15 4 C -0.46 -22.02 8.94 23.15 0.21 -21.81 15 5 H 0.10 4.25 7.06 -2.91 -0.02 4.23 15 6 C 0.04 1.66 5.42 85.34 0.46 2.13 15 7 N -0.80 -38.47 10.77 21.88 0.24 -38.23 15 8 Si 1.00 33.30 29.57 68.60 2.03 35.33 15 9 H -0.26 -8.32 7.11 99.48 0.71 -7.62 15 10 H -0.25 -8.01 7.11 99.48 0.71 -7.30 15 11 H -0.27 -8.57 7.11 99.48 0.71 -7.87 15 12 C -0.33 -17.52 9.67 23.10 0.22 -17.29 15 13 C -0.16 -8.14 6.20 -21.34 -0.13 -8.28 15 14 C 0.11 4.79 11.41 85.15 0.97 5.76 15 15 N -0.54 -23.31 10.42 -198.63 -2.07 -25.38 15 16 C 0.21 8.73 12.24 180.80 2.21 10.95 15 17 N -0.53 -24.60 10.47 -196.96 -2.06 -26.66 15 18 C 0.24 11.80 7.95 134.22 1.07 12.87 15 19 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 20 H 0.08 2.68 8.14 -2.39 -0.02 2.66 15 21 H 0.09 3.00 7.20 -2.39 -0.02 2.98 15 22 H 0.30 12.63 8.29 -92.71 -0.77 11.86 15 23 H 0.14 7.51 6.34 -2.91 -0.02 7.50 15 24 H 0.17 6.68 8.06 -2.91 -0.02 6.66 15 25 H 0.21 6.84 8.06 -2.91 -0.02 6.81 15 Total: -1.00 -59.99 226.32 4.28 -55.71 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 1.21 Total: 22.11 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 6.66 Total: 2.73 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -5.62 Total: -115.89 kcal Atomic # 14 Polarization: 33.30 SS G_CDS: 2.03 Total: 35.33 kcal Total: -59.99 4.28 -55.71 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259971946.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.763 kcal (2) G-P(sol) polarization free energy of solvation -59.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds