Wall clock time and date at job start Mon Mar 30 2020 02:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.39445 * 126.57923 * 264.68271 * 10 9 7 12 12 C 1.36009 * 108.00027 * 179.83510 * 11 10 9 13 13 N 1.34507 * 109.15865 * 0.44019 * 12 11 10 14 14 N 1.40227 * 133.27636 * 179.74937 * 13 12 11 15 15 C 1.30482 * 119.80002 * 179.97438 * 14 13 12 16 16 N 1.33277 * 122.20102 * 0.02562 * 15 14 13 17 17 C 1.31463 * 121.77896 * 359.97438 * 16 15 14 18 18 C 1.38403 * 126.58479 * 85.00401 * 10 9 7 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 1.08000 * 126.00506 * 359.96898 * 11 10 9 23 23 H 1.07999 * 125.42639 * 180.16491 * 12 11 10 24 24 H 1.08000 * 118.89660 * 180.02562 * 15 14 13 25 25 H 1.07995 * 120.29938 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6914 -4.3387 -1.1284 12 6 3.5625 -5.2921 -0.7014 13 7 3.6604 -5.2322 0.6387 14 7 4.3933 -5.9657 1.5828 15 6 4.2885 -5.6777 2.8511 16 7 3.5000 -4.6989 3.2944 17 6 2.7803 -3.9648 2.4749 18 6 2.8397 -4.2137 1.0943 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 2.4085 -4.1508 -2.1536 23 1 4.0883 -5.9894 -1.3368 24 1 4.8599 -6.2517 3.5655 25 1 2.1496 -3.1773 2.8602 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259977840.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:50 Heat of formation + Delta-G solvation = 93.854243 kcal Electronic energy + Delta-G solvation = -12241.723746 eV Core-core repulsion = 10028.612128 eV Total energy + Delta-G solvation = -2213.111619 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.01404 -39.18416 -35.76669 -34.61728 -32.17613 -31.20015 -28.62167 -25.93260 -25.28197 -23.21523 -20.87558 -19.65989 -18.50124 -18.34244 -16.71998 -16.63957 -16.03778 -15.33827 -14.68997 -14.39841 -14.15972 -13.85542 -13.65030 -13.37736 -12.79815 -12.55030 -12.21335 -12.17092 -11.69621 -11.43711 -10.65724 -10.54542 -9.67930 -8.87225 -8.14049 -6.27438 -0.64478 0.44706 1.06900 1.43790 1.44522 1.54991 1.93794 2.40767 2.50981 3.12400 3.16005 3.18760 3.80512 4.20824 4.23441 4.47240 4.70595 4.87082 5.11006 5.15779 5.39015 5.55458 5.76698 5.78285 5.81672 6.21179 6.24672 6.83731 7.04833 7.40905 8.93345 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.043811 B = 0.009470 C = 0.008693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.951196 B = 2955.892681 C = 3220.355272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.013 3.987 3 Si 0.958 3.042 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.524 4.524 8 H 0.049 0.951 9 C 0.083 3.917 10 C -0.047 4.047 11 C -0.196 4.196 12 C 0.061 3.939 13 N -0.274 5.274 14 N -0.350 5.350 15 C 0.286 3.714 16 N -0.582 5.582 17 C 0.286 3.714 18 C -0.140 4.140 19 H 0.266 0.734 20 H 0.013 0.987 21 H 0.017 0.983 22 H 0.172 0.828 23 H 0.210 0.790 24 H 0.257 0.743 25 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.592 -8.773 1.791 11.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.186 4.186 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.562 4.562 8 H 0.067 0.933 9 C 0.045 3.955 10 C -0.060 4.060 11 C -0.220 4.220 12 C -0.081 4.081 13 N -0.036 5.036 14 N -0.165 5.165 15 C -0.012 4.012 16 N -0.300 5.300 17 C 0.100 3.900 18 C -0.247 4.247 19 H 0.075 0.925 20 H 0.032 0.968 21 H 0.035 0.965 22 H 0.189 0.811 23 H 0.227 0.773 24 H 0.273 0.727 25 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 7.299 -9.595 2.360 12.284 hybrid contribution -0.230 1.356 -0.464 1.452 sum 7.069 -8.239 1.896 11.020 Atomic orbital electron populations 1.70051 1.07383 1.27893 1.51184 1.25760 0.95623 1.02506 0.94686 0.85554 0.78556 0.79134 0.78443 1.19862 1.20525 1.19571 1.21283 0.92815 0.91098 1.51020 0.93277 1.17609 0.91961 0.89112 0.96785 1.20603 0.97945 0.96108 0.91359 1.21332 1.02150 0.98534 1.00000 1.22181 1.03159 1.03475 0.79305 1.45316 1.29084 1.22495 1.06716 1.75943 1.18415 1.20256 1.01857 1.26518 0.92480 0.91895 0.90293 1.68592 1.12623 1.10210 1.38619 1.23452 0.88359 0.91819 0.86371 1.19941 1.07046 1.00764 0.96917 0.92532 0.96846 0.96519 0.81081 0.77282 0.72741 0.79179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.31 13.29 21.45 0.28 -53.03 15 2 C 0.01 0.71 5.46 84.66 0.46 1.18 15 3 Si 0.96 43.03 29.54 68.60 2.03 45.05 15 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 7 C -0.52 -28.59 9.09 25.60 0.23 -28.35 15 8 H 0.05 2.69 7.74 -2.91 -0.02 2.67 15 9 C 0.08 4.19 5.50 29.10 0.16 4.35 15 10 C -0.05 -2.01 5.41 -19.53 -0.11 -2.12 15 11 C -0.20 -7.03 10.76 22.04 0.24 -6.79 15 12 C 0.06 1.95 11.85 83.76 0.99 2.94 15 13 N -0.27 -9.98 3.99 -188.17 -0.75 -10.73 15 14 N -0.35 -11.38 11.98 -61.35 -0.73 -12.11 15 15 C 0.29 8.07 12.35 180.82 2.23 10.30 15 16 N -0.58 -19.04 10.40 -199.02 -2.07 -21.11 15 17 C 0.29 10.46 11.35 85.28 0.97 11.43 15 18 C -0.14 -5.64 6.80 38.66 0.26 -5.38 15 19 H 0.27 14.42 8.31 -92.70 -0.77 13.65 15 20 H 0.01 0.70 8.14 -2.38 -0.02 0.68 15 21 H 0.02 0.88 8.14 -2.39 -0.02 0.86 15 22 H 0.17 5.31 8.06 -2.91 -0.02 5.29 15 23 H 0.21 4.69 8.06 -2.91 -0.02 4.67 15 24 H 0.26 4.34 8.06 -2.91 -0.02 4.32 15 25 H 0.19 6.53 8.06 -2.91 -0.02 6.50 15 Total: -1.00 -65.10 233.65 5.39 -59.71 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: 1.20 Total: 4.66 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: 5.44 Total: -12.44 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -3.27 Total: -96.98 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -65.10 5.39 -59.71 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259977840.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.565 kcal (2) G-P(sol) polarization free energy of solvation -65.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds