Wall clock time and date at job start Mon Mar 30 2020 02:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99796 * 2 1 4 4 H 1.48498 * 109.47491 * 239.99831 * 3 2 1 5 5 H 1.48504 * 109.47386 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47407 * 119.99722 * 3 2 1 7 7 C 1.37868 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00172 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00088 * 0.02562 * 7 2 1 10 10 C 1.50694 * 109.47204 * 180.02562 * 9 7 2 11 11 N 1.31103 * 125.27484 * 270.29296 * 10 9 7 12 12 C 1.33241 * 109.89869 * 180.20217 * 11 10 9 13 13 C 1.38092 * 107.38483 * 359.55218 * 12 11 10 14 14 C 1.40647 * 134.21158 * 180.30372 * 13 12 11 15 15 C 1.36143 * 118.94104 * 179.97438 * 14 13 12 16 16 C 1.40266 * 120.16043 * 359.97438 * 15 14 13 17 17 N 1.30519 * 121.26397 * 0.02562 * 16 15 14 18 18 N 1.34565 * 125.27385 * 89.99827 * 10 9 7 19 19 H 0.97001 * 120.00442 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46904 * 60.00094 * 9 7 2 21 21 H 1.09001 * 109.47023 * 300.00326 * 9 7 2 22 22 H 1.08002 * 126.31158 * 179.82486 * 12 11 10 23 23 H 1.07992 * 120.52698 * 359.97438 * 14 13 12 24 24 H 1.07996 * 119.91668 * 179.97438 * 15 14 13 25 25 H 1.08004 * 119.36878 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0018 11 7 2.7274 -4.2169 -1.0679 12 6 3.5573 -5.1972 -0.7135 13 6 3.5879 -5.2332 0.6666 14 6 4.2647 -6.0243 1.6123 15 6 4.0612 -5.7860 2.9371 16 6 3.1893 -4.7653 3.3438 17 7 2.5576 -4.0269 2.4724 18 7 2.7346 -4.2346 1.1010 19 1 -0.4851 0.8400 -0.0004 20 1 0.6248 -2.5571 -0.8897 21 1 0.6241 -2.5567 0.8903 22 1 4.1083 -5.8418 -1.3824 23 1 4.9350 -6.8084 1.2925 24 1 4.5725 -6.3842 3.6768 25 1 3.0370 -4.5875 4.3981 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260081809.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:26 Heat of formation + Delta-G solvation = 110.533577 kcal Electronic energy + Delta-G solvation = -12267.307370 eV Core-core repulsion = 10054.919022 eV Total energy + Delta-G solvation = -2212.388348 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.87263 -37.56382 -33.53148 -32.75974 -31.02031 -29.90899 -26.86494 -24.22593 -23.35298 -21.98367 -20.13666 -17.19508 -16.78693 -16.44287 -15.68102 -15.16316 -14.56236 -14.09447 -13.33607 -12.55595 -12.48429 -12.35597 -11.83877 -11.37751 -10.82408 -10.66237 -10.50925 -10.16095 -9.86804 -9.66118 -9.49816 -9.18273 -8.42954 -7.21587 -6.04361 -4.08137 0.86105 1.76610 2.57568 3.34528 3.37327 3.40723 3.59385 3.70226 4.45616 4.63365 4.76422 4.93912 5.20525 5.26970 5.33533 5.72130 5.80189 6.01520 6.19095 6.45750 6.86809 7.10013 7.44186 7.47873 7.88603 8.14076 8.28470 8.59221 8.91425 9.54253 11.05538 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.044431 B = 0.009566 C = 0.008832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.032328 B = 2926.468003 C = 3169.584417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.063 3.937 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.277 1.277 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.094 3.906 10 C 0.299 3.701 11 N -0.474 5.474 12 C 0.027 3.973 13 C -0.111 4.111 14 C 0.009 3.991 15 C -0.228 4.228 16 C 0.123 3.877 17 N -0.247 5.247 18 N -0.282 5.282 19 H 0.264 0.736 20 H 0.055 0.945 21 H 0.044 0.956 22 H 0.177 0.823 23 H 0.145 0.855 24 H 0.140 0.860 25 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.455 -11.126 5.692 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.203 1.203 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.056 3.944 10 C 0.040 3.960 11 N -0.190 5.190 12 C -0.132 4.132 13 C -0.220 4.220 14 C -0.018 4.018 15 C -0.251 4.251 16 C -0.074 4.074 17 N -0.054 5.054 18 N -0.052 5.052 19 H 0.074 0.926 20 H 0.073 0.927 21 H 0.062 0.938 22 H 0.194 0.806 23 H 0.163 0.837 24 H 0.157 0.843 25 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 6.336 -9.885 4.911 12.727 hybrid contribution 1.390 -0.077 0.885 1.649 sum 7.726 -9.962 5.796 13.875 Atomic orbital electron populations 1.69931 1.05957 1.27148 1.50082 1.24921 0.94919 0.99168 0.94929 0.86516 0.79491 0.82493 0.78709 1.20044 1.21047 1.20280 1.20807 0.92854 0.89458 1.51703 0.92783 1.17977 0.90619 0.86002 0.99828 1.24705 0.98239 0.96716 0.76304 1.70393 1.12615 1.09306 1.26662 1.22652 1.01098 0.99293 0.90193 1.19872 1.05573 1.00201 0.96324 1.20612 0.94287 0.95387 0.91541 1.21276 1.04638 1.02569 0.96614 1.23956 0.92242 0.91470 0.99734 1.75677 1.21468 1.22245 0.85996 1.46993 1.30610 1.23924 1.03627 0.92598 0.92665 0.93774 0.80588 0.83709 0.84256 0.79738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.98 15 2 C 0.06 1.82 5.46 -17.82 -0.10 1.72 15 3 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 15 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 15 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 7 C -0.51 -15.00 9.09 -34.44 -0.31 -15.31 15 8 H 0.05 1.61 7.74 -52.48 -0.41 1.21 15 9 C 0.09 2.61 5.60 -29.04 -0.16 2.44 15 10 C 0.30 7.44 7.28 -155.35 -1.13 6.30 15 11 N -0.47 -11.04 11.19 -10.19 -0.11 -11.16 15 12 C 0.03 0.50 12.02 -16.99 -0.20 0.30 15 13 C -0.11 -2.06 6.88 -84.06 -0.58 -2.64 15 14 C 0.01 0.13 10.12 -39.43 -0.40 -0.27 15 15 C -0.23 -2.75 10.03 -39.57 -0.40 -3.14 15 16 C 0.12 1.75 11.28 -17.35 -0.20 1.56 15 17 N -0.25 -4.98 11.92 30.66 0.37 -4.62 15 18 N -0.28 -6.27 4.01 -8.19 -0.03 -6.30 15 19 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15 20 H 0.06 1.58 8.14 -51.93 -0.42 1.16 15 21 H 0.04 1.26 8.14 -51.93 -0.42 0.84 15 22 H 0.18 2.45 8.06 -52.49 -0.42 2.03 15 23 H 0.15 1.33 8.06 -52.49 -0.42 0.91 15 24 H 0.14 1.10 8.06 -52.49 -0.42 0.67 15 25 H 0.19 1.78 8.06 -52.48 -0.42 1.36 15 LS Contribution 233.61 15.07 3.52 3.52 Total: -1.00 -34.12 233.61 -6.10 -40.22 By element: Atomic # 1 Polarization: -1.72 SS G_CDS: -2.08 Total: -3.79 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -3.48 Total: -9.04 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 0.95 Total: -48.06 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -34.12 -6.10 -40.22 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260081809.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.753 kcal (2) G-P(sol) polarization free energy of solvation -34.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds