Wall clock time and date at job start Mon Mar 30 2020 02:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99796 * 2 1 4 4 H 1.48498 * 109.47491 * 239.99831 * 3 2 1 5 5 H 1.48504 * 109.47386 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47407 * 119.99722 * 3 2 1 7 7 C 1.37868 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00172 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00088 * 0.02562 * 7 2 1 10 10 C 1.50694 * 109.47204 * 180.02562 * 9 7 2 11 11 N 1.31103 * 125.27484 * 270.29296 * 10 9 7 12 12 C 1.33241 * 109.89869 * 180.20217 * 11 10 9 13 13 C 1.38092 * 107.38483 * 359.55218 * 12 11 10 14 14 C 1.40647 * 134.21158 * 180.30372 * 13 12 11 15 15 C 1.36143 * 118.94104 * 179.97438 * 14 13 12 16 16 C 1.40266 * 120.16043 * 359.97438 * 15 14 13 17 17 N 1.30519 * 121.26397 * 0.02562 * 16 15 14 18 18 N 1.34565 * 125.27385 * 89.99827 * 10 9 7 19 19 H 0.97001 * 120.00442 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46904 * 60.00094 * 9 7 2 21 21 H 1.09001 * 109.47023 * 300.00326 * 9 7 2 22 22 H 1.08002 * 126.31158 * 179.82486 * 12 11 10 23 23 H 1.07992 * 120.52698 * 359.97438 * 14 13 12 24 24 H 1.07996 * 119.91668 * 179.97438 * 15 14 13 25 25 H 1.08004 * 119.36878 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0018 11 7 2.7274 -4.2169 -1.0679 12 6 3.5573 -5.1972 -0.7135 13 6 3.5879 -5.2332 0.6666 14 6 4.2647 -6.0243 1.6123 15 6 4.0612 -5.7860 2.9371 16 6 3.1893 -4.7653 3.3438 17 7 2.5576 -4.0269 2.4724 18 7 2.7346 -4.2346 1.1010 19 1 -0.4851 0.8400 -0.0004 20 1 0.6248 -2.5571 -0.8897 21 1 0.6241 -2.5567 0.8903 22 1 4.1083 -5.8418 -1.3824 23 1 4.9350 -6.8084 1.2925 24 1 4.5725 -6.3842 3.6768 25 1 3.0370 -4.5875 4.3981 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260081809.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:26 Heat of formation + Delta-G solvation = 86.488147 kcal Electronic energy + Delta-G solvation = -12268.350058 eV Core-core repulsion = 10054.919022 eV Total energy + Delta-G solvation = -2213.431036 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.35429 -38.88968 -35.53539 -34.26035 -32.49501 -31.75757 -28.55425 -25.75033 -25.13231 -23.42011 -21.69797 -18.80251 -18.54022 -18.03104 -16.86574 -16.77072 -16.44982 -15.54664 -14.63241 -14.42414 -14.11571 -13.64585 -13.49868 -13.41668 -12.75373 -12.65254 -12.05425 -11.87650 -11.49900 -11.32170 -11.23368 -10.76125 -10.67318 -8.69782 -8.23011 -6.40538 -0.28156 0.43504 1.14779 1.35300 1.39843 1.48137 2.04763 2.38494 2.40763 3.04130 3.42776 3.65646 3.76016 3.90696 4.14194 4.49262 4.59744 4.77460 5.06909 5.09540 5.15349 5.28351 5.60499 5.68720 5.70614 6.01806 6.63794 6.78841 7.01880 7.26734 8.83671 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.044431 B = 0.009566 C = 0.008832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.032328 B = 2926.468003 C = 3169.584417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.012 3.988 3 Si 0.972 3.028 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.530 4.530 8 H 0.041 0.959 9 C 0.112 3.888 10 C 0.238 3.762 11 N -0.501 5.501 12 C 0.007 3.993 13 C -0.104 4.104 14 C 0.001 3.999 15 C -0.202 4.202 16 C 0.136 3.864 17 N -0.320 5.320 18 N -0.290 5.290 19 H 0.270 0.730 20 H 0.024 0.976 21 H 0.016 0.984 22 H 0.221 0.779 23 H 0.198 0.802 24 H 0.199 0.801 25 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.156 -12.639 7.619 17.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.796 3.204 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.569 4.569 8 H 0.060 0.940 9 C 0.073 3.927 10 C -0.021 4.021 11 N -0.218 5.218 12 C -0.151 4.151 13 C -0.214 4.214 14 C -0.026 4.026 15 C -0.224 4.224 16 C -0.058 4.058 17 N -0.129 5.129 18 N -0.057 5.057 19 H 0.079 0.921 20 H 0.043 0.957 21 H 0.034 0.966 22 H 0.237 0.763 23 H 0.215 0.785 24 H 0.217 0.783 25 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 9.034 -11.411 6.852 16.087 hybrid contribution 0.644 0.180 0.515 0.844 sum 9.679 -11.231 7.367 16.556 Atomic orbital electron populations 1.70049 1.07525 1.28448 1.50310 1.25875 0.95899 1.02983 0.93993 0.85406 0.78338 0.77715 0.78989 1.19371 1.19504 1.19497 1.21018 0.92356 0.91020 1.52462 0.94046 1.17417 0.90839 0.87591 0.96847 1.23739 1.01293 0.98736 0.78290 1.70219 1.13785 1.10763 1.27056 1.23380 1.01122 0.99097 0.91459 1.20723 1.04181 0.99193 0.97270 1.21306 0.94435 0.95757 0.91123 1.21974 1.02252 1.00854 0.97365 1.25043 0.89919 0.89963 1.00838 1.75745 1.25508 1.26163 0.85531 1.46943 1.30478 1.24069 1.04240 0.92091 0.95747 0.96625 0.76252 0.78491 0.78348 0.75137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.56 13.29 21.44 0.28 -57.28 15 2 C 0.01 0.70 5.46 84.65 0.46 1.16 15 3 Si 0.97 46.41 29.54 68.60 2.03 48.43 15 4 H -0.27 -12.48 7.11 99.48 0.71 -11.78 15 5 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 6 H -0.27 -12.48 7.11 99.48 0.71 -11.77 15 7 C -0.53 -33.04 9.09 25.60 0.23 -32.81 15 8 H 0.04 2.61 7.74 -2.91 -0.02 2.59 15 9 C 0.11 6.72 5.60 29.10 0.16 6.88 15 10 C 0.24 12.60 7.28 138.10 1.01 13.61 15 11 N -0.50 -24.45 11.19 -186.16 -2.08 -26.53 15 12 C 0.01 0.26 12.02 84.44 1.02 1.28 15 13 C -0.10 -3.68 6.88 38.67 0.27 -3.41 15 14 C 0.00 0.02 10.12 22.37 0.23 0.24 15 15 C -0.20 -3.65 10.03 22.28 0.22 -3.43 15 16 C 0.14 3.40 11.28 85.38 0.96 4.36 15 17 N -0.32 -12.92 11.92 -56.92 -0.68 -13.60 15 18 N -0.29 -13.14 4.01 -179.82 -0.72 -13.86 15 19 H 0.27 15.60 8.31 -92.71 -0.77 14.83 15 20 H 0.02 1.55 8.14 -2.39 -0.02 1.53 15 21 H 0.02 0.98 8.14 -2.39 -0.02 0.96 15 22 H 0.22 5.61 8.06 -2.91 -0.02 5.59 15 23 H 0.20 2.22 8.06 -2.91 -0.02 2.20 15 24 H 0.20 1.35 8.06 -2.91 -0.02 1.33 15 25 H 0.23 3.30 8.06 -2.91 -0.02 3.28 15 Total: -1.00 -82.24 233.61 4.58 -77.66 By element: Atomic # 1 Polarization: -3.91 SS G_CDS: 1.20 Total: -2.71 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 4.56 Total: -12.11 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -3.20 Total: -111.27 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -82.24 4.58 -77.66 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260081809.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.147 kcal (2) G-P(sol) polarization free energy of solvation -82.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds