Wall clock time and date at job start Mon Mar 30 2020 02:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86803 * 119.99822 * 2 1 4 4 H 1.48498 * 109.47174 * 269.99894 * 3 2 1 5 5 H 1.48503 * 109.47284 * 30.00247 * 3 2 1 6 6 H 1.48501 * 109.47062 * 149.99943 * 3 2 1 7 7 C 1.38795 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99866 * 359.97438 * 7 2 1 9 9 N 1.36840 * 120.00302 * 180.02562 * 7 2 1 10 10 C 1.38665 * 120.00229 * 179.97438 * 9 7 2 11 11 C 1.39328 * 121.06846 * 359.97438 * 10 9 7 12 12 C 1.38244 * 119.27613 * 180.02562 * 11 10 9 13 13 N 1.31757 * 121.70389 * 359.97163 * 12 11 10 14 14 C 1.32787 * 121.89773 * 0.02562 * 13 12 11 15 15 N 1.37421 * 133.12075 * 180.02562 * 14 13 12 16 16 H 0.96992 * 124.99692 * 359.97438 * 15 14 13 17 17 C 1.36955 * 109.99645 * 180.02562 * 15 14 13 18 18 C 1.34326 * 109.83597 * 359.97438 * 17 15 14 19 19 C 1.40529 * 121.07087 * 179.71677 * 10 9 7 20 20 H 0.97000 * 120.00467 * 0.02562 * 1 2 3 21 21 H 0.97009 * 119.99584 * 0.26996 * 9 7 2 22 22 H 1.07993 * 120.36220 * 359.97438 * 11 10 9 23 23 H 1.08006 * 119.14539 * 179.97438 * 12 11 10 24 24 H 1.08001 * 125.07862 * 180.02562 * 17 15 14 25 25 H 1.07998 * 126.57196 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4471 2.6527 0.7001 6 1 3.5472 1.4403 0.7001 7 6 2.0097 -1.2020 -0.0005 8 1 1.4697 -2.1373 -0.0005 9 7 3.3781 -1.2020 0.0000 10 6 4.0714 -2.4028 0.0000 11 6 3.3975 -3.6223 0.0000 12 6 4.1258 -4.7972 0.0005 13 7 5.4434 -4.7952 0.0005 14 6 6.1433 -3.6667 0.0004 15 7 7.4908 -3.3971 -0.0001 16 1 8.1921 -4.0671 -0.0001 17 6 7.6975 -2.0433 0.0007 18 6 6.5173 -1.4019 0.0011 19 6 5.4765 -2.4291 -0.0054 20 1 -0.4851 0.8400 -0.0004 21 1 3.8631 -0.3618 0.0047 22 1 2.3179 -3.6492 0.0004 23 1 3.6012 -5.7413 0.0010 24 1 8.6650 -1.5632 0.0001 25 1 6.3660 -0.3326 0.0014 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260154710.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:29 Heat of formation + Delta-G solvation = 73.289556 kcal Electronic energy + Delta-G solvation = -12295.148075 eV Core-core repulsion = 10081.144705 eV Total energy + Delta-G solvation = -2214.003370 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.52682 -37.25314 -35.47720 -32.48758 -30.40636 -28.84644 -28.01570 -24.71772 -22.13679 -21.35397 -19.87802 -18.64295 -17.43670 -15.90136 -15.38546 -14.66729 -14.17943 -14.03657 -13.48557 -13.10527 -12.64797 -12.17614 -12.11933 -12.04236 -11.31370 -11.17405 -10.79773 -10.52901 -10.05099 -9.23730 -8.36445 -8.30796 -7.60533 -6.76030 -6.59634 -3.88602 2.09559 2.52727 2.97047 2.99202 3.04124 3.40732 3.54105 3.91486 4.71564 4.74488 5.17192 5.36685 5.47485 5.76834 5.99438 6.17031 6.47925 6.55875 6.73033 7.08876 7.20752 7.34259 7.49782 7.69287 7.96511 8.11057 8.45476 9.11851 9.14436 9.16963 10.50815 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.043123 B = 0.010966 C = 0.008770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.142587 B = 2552.643222 C = 3191.942898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.043 3.957 3 Si 0.880 3.120 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.266 1.266 7 C -0.306 4.306 8 H 0.124 0.876 9 N -0.560 5.560 10 C 0.271 3.729 11 C -0.307 4.307 12 C 0.177 3.823 13 N -0.596 5.596 14 C 0.324 3.676 15 N -0.587 5.587 16 H 0.408 0.592 17 C 0.002 3.998 18 C -0.174 4.174 19 C -0.249 4.249 20 H 0.279 0.721 21 H 0.380 0.620 22 H 0.129 0.871 23 H 0.141 0.859 24 H 0.162 0.838 25 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.261 -1.058 -0.002 10.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.191 1.191 7 C -0.435 4.435 8 H 0.141 0.859 9 N -0.163 5.163 10 C 0.142 3.858 11 C -0.339 4.339 12 C 0.018 3.982 13 N -0.320 5.320 14 C 0.092 3.908 15 N -0.195 5.195 16 H 0.244 0.756 17 C -0.123 4.123 18 C -0.200 4.200 19 C -0.260 4.260 20 H 0.089 0.911 21 H 0.215 0.785 22 H 0.146 0.854 23 H 0.158 0.842 24 H 0.179 0.821 25 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.323 -1.585 -0.005 10.444 hybrid contribution 0.306 1.835 0.022 1.861 sum 10.629 0.250 0.017 10.632 Atomic orbital electron populations 1.69671 1.05631 1.28282 1.46664 1.25050 0.95627 0.98496 0.97056 0.86605 0.80006 0.83399 0.79375 1.19175 1.19729 1.19110 1.19555 0.79277 0.96922 1.47794 0.85899 1.41137 1.06349 1.04177 1.64616 1.17251 0.87924 0.86981 0.93609 1.21048 1.00523 0.91004 1.21285 1.21783 0.87573 0.96823 0.92038 1.66478 1.08388 1.27558 1.29561 1.18067 0.84077 0.90090 0.98555 1.41336 1.04719 1.06727 1.66694 0.75597 1.21325 0.98847 0.81766 1.10375 1.21360 0.91172 0.97539 1.09949 1.19130 0.91832 0.94552 1.20499 0.91087 0.78515 0.85370 0.84185 0.82094 0.85109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.68 13.96 55.49 0.77 -22.90 15 2 C 0.04 1.13 5.50 -17.46 -0.10 1.03 15 3 Si 0.88 18.97 27.74 -169.99 -4.71 14.26 15 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 5 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 6 H -0.27 -5.43 6.51 56.52 0.37 -5.06 15 7 C -0.31 -7.97 10.06 -15.11 -0.15 -8.13 15 8 H 0.12 3.37 6.00 -52.49 -0.31 3.06 15 9 N -0.56 -13.30 5.22 -9.34 -0.05 -13.35 15 10 C 0.27 6.27 6.68 -83.50 -0.56 5.71 15 11 C -0.31 -6.80 9.37 -39.17 -0.37 -7.17 15 12 C 0.18 3.57 11.13 -17.58 -0.20 3.37 15 13 N -0.60 -12.50 10.38 -12.36 -0.13 -12.63 15 14 C 0.32 6.65 8.43 -155.66 -1.31 5.34 15 15 N -0.59 -9.49 6.06 -12.14 -0.07 -9.56 15 16 H 0.41 5.22 8.96 -40.82 -0.37 4.86 15 17 C 0.00 0.03 11.83 -16.64 -0.20 -0.17 15 18 C -0.17 -3.13 10.95 -37.75 -0.41 -3.54 15 19 C -0.25 -5.35 6.30 -104.94 -0.66 -6.01 15 20 H 0.28 7.05 8.31 -40.82 -0.34 6.71 15 21 H 0.38 8.48 5.66 -40.82 -0.23 8.25 15 22 H 0.13 2.85 6.09 -52.49 -0.32 2.53 15 23 H 0.14 2.31 8.06 -52.48 -0.42 1.89 15 24 H 0.16 1.67 8.06 -52.49 -0.42 1.25 15 25 H 0.13 2.12 8.06 -52.49 -0.42 1.70 15 LS Contribution 223.53 15.07 3.37 3.37 Total: -1.00 -29.43 223.53 -6.44 -35.87 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -1.67 Total: 14.50 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -3.95 Total: -9.57 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 0.52 Total: -58.43 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.71 Total: 14.26 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -29.43 -6.44 -35.87 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154710.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.161 kcal (2) G-P(sol) polarization free energy of solvation -29.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds