Wall clock time and date at job start Mon Mar 30 2020 02:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86803 * 119.99822 * 2 1 4 4 H 1.48498 * 109.47174 * 269.99894 * 3 2 1 5 5 H 1.48503 * 109.47284 * 30.00247 * 3 2 1 6 6 H 1.48501 * 109.47062 * 149.99943 * 3 2 1 7 7 C 1.38795 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99866 * 359.97438 * 7 2 1 9 9 N 1.36840 * 120.00302 * 180.02562 * 7 2 1 10 10 C 1.38665 * 120.00229 * 179.97438 * 9 7 2 11 11 C 1.39328 * 121.06846 * 359.97438 * 10 9 7 12 12 C 1.38244 * 119.27613 * 180.02562 * 11 10 9 13 13 N 1.31757 * 121.70389 * 359.97163 * 12 11 10 14 14 C 1.32787 * 121.89773 * 0.02562 * 13 12 11 15 15 N 1.37421 * 133.12075 * 180.02562 * 14 13 12 16 16 H 0.96992 * 124.99692 * 359.97438 * 15 14 13 17 17 C 1.36955 * 109.99645 * 180.02562 * 15 14 13 18 18 C 1.34326 * 109.83597 * 359.97438 * 17 15 14 19 19 C 1.40529 * 121.07087 * 179.71677 * 10 9 7 20 20 H 0.97000 * 120.00467 * 0.02562 * 1 2 3 21 21 H 0.97009 * 119.99584 * 0.26996 * 9 7 2 22 22 H 1.07993 * 120.36220 * 359.97438 * 11 10 9 23 23 H 1.08006 * 119.14539 * 179.97438 * 12 11 10 24 24 H 1.08001 * 125.07862 * 180.02562 * 17 15 14 25 25 H 1.07998 * 126.57196 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4471 2.6527 0.7001 6 1 3.5472 1.4403 0.7001 7 6 2.0097 -1.2020 -0.0005 8 1 1.4697 -2.1373 -0.0005 9 7 3.3781 -1.2020 0.0000 10 6 4.0714 -2.4028 0.0000 11 6 3.3975 -3.6223 0.0000 12 6 4.1258 -4.7972 0.0005 13 7 5.4434 -4.7952 0.0005 14 6 6.1433 -3.6667 0.0004 15 7 7.4908 -3.3971 -0.0001 16 1 8.1921 -4.0671 -0.0001 17 6 7.6975 -2.0433 0.0007 18 6 6.5173 -1.4019 0.0011 19 6 5.4765 -2.4291 -0.0054 20 1 -0.4851 0.8400 -0.0004 21 1 3.8631 -0.3618 0.0047 22 1 2.3179 -3.6492 0.0004 23 1 3.6012 -5.7413 0.0010 24 1 8.6650 -1.5632 0.0001 25 1 6.3660 -0.3326 0.0014 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260154710.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:29 Heat of formation + Delta-G solvation = 53.516903 kcal Electronic energy + Delta-G solvation = -12296.005481 eV Core-core repulsion = 10081.144705 eV Total energy + Delta-G solvation = -2214.860777 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.04384 -38.87809 -37.18014 -34.34042 -31.98902 -30.47276 -29.55573 -26.55024 -23.72116 -23.02710 -21.27426 -20.42088 -19.09666 -17.46031 -17.00325 -16.36846 -15.76005 -15.71522 -15.11997 -14.81743 -14.03152 -13.84774 -13.82270 -13.56608 -12.93334 -12.84729 -12.43709 -12.16042 -11.92423 -11.05134 -10.04847 -9.90778 -9.17911 -8.50033 -8.38062 -5.86047 0.54587 0.83022 1.26047 1.32599 1.35544 1.99427 2.14467 2.18471 2.89461 3.00063 3.40025 4.02143 4.13397 4.29722 4.46101 4.76132 4.93317 5.05275 5.11271 5.37211 5.61400 5.70839 5.83268 5.91184 6.33430 6.58181 6.77327 7.24891 7.34043 7.52868 8.64486 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.043123 B = 0.010966 C = 0.008770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.142587 B = 2552.643222 C = 3191.942898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.947 3.053 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.247 1.247 7 C -0.317 4.317 8 H 0.090 0.910 9 N -0.577 5.577 10 C 0.258 3.742 11 C -0.328 4.328 12 C 0.178 3.822 13 N -0.591 5.591 14 C 0.296 3.704 15 N -0.572 5.572 16 H 0.428 0.572 17 C 0.051 3.949 18 C -0.213 4.213 19 C -0.266 4.266 20 H 0.280 0.720 21 H 0.386 0.614 22 H 0.114 0.886 23 H 0.175 0.825 24 H 0.222 0.778 25 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.092 -0.752 0.026 14.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.210 4.210 3 Si 0.769 3.231 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.171 1.171 7 C -0.447 4.447 8 H 0.108 0.892 9 N -0.184 5.184 10 C 0.133 3.867 11 C -0.359 4.359 12 C 0.017 3.983 13 N -0.313 5.313 14 C 0.064 3.936 15 N -0.181 5.181 16 H 0.267 0.733 17 C -0.075 4.075 18 C -0.239 4.239 19 C -0.278 4.278 20 H 0.090 0.910 21 H 0.222 0.778 22 H 0.132 0.868 23 H 0.192 0.808 24 H 0.238 0.762 25 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 14.237 -1.335 0.023 14.299 hybrid contribution -0.586 1.460 0.010 1.573 sum 13.650 0.125 0.033 13.651 Atomic orbital electron populations 1.69797 1.07342 1.29238 1.49521 1.25819 0.96376 1.02025 0.96776 0.85568 0.79299 0.78446 0.79749 1.18475 1.19473 1.17149 1.19345 0.80563 0.96106 1.48642 0.89249 1.40857 1.05169 1.04562 1.67854 1.17708 0.89256 0.87084 0.92692 1.21201 1.00253 0.92065 1.22373 1.22260 0.87559 0.97485 0.91038 1.66577 1.08546 1.28003 1.28222 1.18423 0.86008 0.89655 0.99544 1.41466 1.03489 1.08028 1.65107 0.73258 1.22249 1.00250 0.80659 1.04316 1.21670 0.91110 0.98163 1.12933 1.19569 0.91643 0.96694 1.19856 0.90987 0.77846 0.86762 0.80795 0.76204 0.83593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.81 13.96 21.64 0.30 -52.51 15 2 C -0.01 -0.51 5.50 84.87 0.47 -0.04 15 3 Si 0.95 39.60 27.74 68.60 1.90 41.50 15 4 H -0.26 -10.48 7.11 99.48 0.71 -9.78 15 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 15 6 H -0.25 -9.43 6.51 99.48 0.65 -8.78 15 7 C -0.32 -17.38 10.06 84.05 0.85 -16.54 15 8 H 0.09 5.33 6.00 -2.91 -0.02 5.31 15 9 N -0.58 -28.00 5.22 -183.47 -0.96 -28.96 15 10 C 0.26 12.07 6.68 38.88 0.26 12.33 15 11 C -0.33 -14.91 9.37 22.53 0.21 -14.70 15 12 C 0.18 7.03 11.13 84.71 0.94 7.97 15 13 N -0.59 -23.62 10.38 -193.03 -2.00 -25.62 15 14 C 0.30 11.38 8.43 133.84 1.13 12.51 15 15 N -0.57 -15.79 6.06 -192.31 -1.16 -16.95 15 16 H 0.43 8.71 8.96 -92.71 -0.83 7.88 15 17 C 0.05 1.22 11.83 83.00 0.98 2.20 15 18 C -0.21 -6.91 10.95 23.45 0.26 -6.65 15 19 C -0.27 -11.02 6.30 -20.07 -0.13 -11.15 15 20 H 0.28 14.86 8.31 -92.71 -0.77 14.09 15 21 H 0.39 17.16 5.66 -92.70 -0.53 16.63 15 22 H 0.11 5.44 6.09 -2.91 -0.02 5.42 15 23 H 0.18 5.50 8.06 -2.91 -0.02 5.48 15 24 H 0.22 2.74 8.06 -2.91 -0.02 2.72 15 25 H 0.15 4.22 8.06 -2.91 -0.02 4.20 15 Total: -1.00 -66.63 223.53 2.87 -63.76 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: -0.17 Total: 32.84 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 4.97 Total: -14.06 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -3.83 Total: -124.05 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 1.90 Total: 41.50 kcal Total: -66.63 2.87 -63.76 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154710.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.276 kcal (2) G-P(sol) polarization free energy of solvation -66.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds