Wall clock time and date at job start Mon Mar 30 2020 02:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35225 * 126.41476 * 2 1 4 4 N 1.33492 * 108.64478 * 179.86817 * 3 2 1 5 5 C 1.32452 * 109.18687 * 0.40656 * 4 3 2 6 6 C 1.41224 * 132.04388 * 179.72810 * 5 4 3 7 7 C 1.35539 * 119.53549 * 180.02562 * 6 5 4 8 8 C 1.46332 * 119.48441 * 0.02562 * 7 6 5 9 9 C 1.41334 * 120.05542 * 180.02562 * 8 7 6 10 10 H 1.08006 * 120.00088 * 359.97163 * 9 8 7 11 11 C 1.39998 * 120.00151 * 179.97438 * 9 8 7 12 12 N 1.30758 * 119.99934 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99884 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47422 * 90.00056 * 13 11 9 15 15 H 1.48509 * 109.46877 * 209.99795 * 13 11 9 16 16 H 1.48500 * 109.47238 * 329.99654 * 13 11 9 17 17 N 1.32737 * 119.88845 * 359.97438 * 8 7 6 18 18 N 1.36665 * 126.41128 * 180.31242 * 2 1 3 19 19 H 1.09002 * 109.47152 * 269.68580 * 1 2 3 20 20 H 1.09001 * 109.46980 * 149.68680 * 1 2 3 21 21 H 1.09004 * 109.47113 * 29.68661 * 1 2 3 22 22 H 1.07996 * 125.67364 * 0.02562 * 3 2 1 23 23 H 1.08003 * 120.22595 * 0.02562 * 6 5 4 24 24 H 1.07999 * 120.25601 * 179.97438 * 7 6 5 25 25 H 0.97004 * 120.00265 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0882 0.0000 4 7 3.5810 0.6808 0.0029 5 6 3.6138 -0.6433 -0.0041 6 6 4.6856 -1.5628 -0.0097 7 6 4.4249 -2.8929 -0.0171 8 6 3.0363 -3.3546 -0.0196 9 6 2.7507 -4.7388 -0.0267 10 1 3.5575 -5.4567 -0.0308 11 6 1.4218 -5.1793 -0.0286 12 7 0.4449 -4.3101 -0.0233 13 14 1.0443 -7.0087 -0.0388 14 1 0.9448 -7.5015 1.3586 15 1 -0.2436 -7.2445 -0.7396 16 1 2.1314 -7.7346 -0.7434 17 7 2.0455 -2.4713 -0.0142 18 7 2.3182 -1.0998 -0.0060 19 1 -0.3633 -0.0056 1.0277 20 1 -0.3633 -0.8872 -0.5187 21 1 -0.3633 0.8928 -0.5090 22 1 1.9776 2.1158 0.0004 23 1 5.7059 -1.2086 -0.0082 24 1 5.2357 -3.6063 -0.0219 25 1 -0.4759 -4.6153 -0.0250 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260187798.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:42 Heat of formation + Delta-G solvation = 99.611208 kcal Electronic energy + Delta-G solvation = -12480.755127 eV Core-core repulsion = 10267.893149 eV Total energy + Delta-G solvation = -2212.861978 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.93772 -36.34779 -33.54000 -32.37324 -30.23332 -29.65836 -26.28062 -25.47310 -22.35904 -21.13178 -19.60242 -17.85956 -16.51846 -15.41505 -15.06555 -14.63620 -14.08201 -12.91855 -12.81742 -12.36859 -12.28043 -12.13621 -11.59232 -11.54284 -11.27719 -10.96171 -10.86560 -10.34534 -9.70064 -9.44960 -9.38534 -8.21742 -7.94634 -6.85928 -6.76881 -4.98280 2.01971 2.69140 2.97659 3.00397 3.03888 3.72587 3.81521 3.92196 4.42083 5.21835 5.26699 5.55090 5.84811 5.99322 6.04100 6.22063 6.31465 6.44562 6.60668 6.87082 6.89717 6.94871 7.27720 7.57205 7.72565 8.02873 8.22285 8.53397 8.97073 9.73843 10.05768 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.046269 B = 0.011411 C = 0.009199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.006648 B = 2453.100546 C = 3042.961849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.020 4.020 3 C -0.029 4.029 4 N -0.499 5.499 5 C 0.131 3.869 6 C -0.069 4.069 7 C -0.143 4.143 8 C 0.213 3.787 9 C -0.409 4.409 10 H 0.097 0.903 11 C 0.061 3.939 12 N -0.719 5.719 13 Si 0.919 3.081 14 H -0.267 1.267 15 H -0.275 1.275 16 H -0.259 1.259 17 N -0.324 5.324 18 N -0.244 5.244 19 H 0.058 0.942 20 H 0.071 0.929 21 H 0.064 0.936 22 H 0.164 0.836 23 H 0.131 0.869 24 H 0.128 0.872 25 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.054 -0.282 -0.058 0.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.144 4.144 3 C -0.186 4.186 4 N -0.221 5.221 5 C -0.118 4.118 6 C -0.093 4.093 7 C -0.170 4.170 8 C 0.063 3.937 9 C -0.448 4.448 10 H 0.115 0.885 11 C -0.165 4.165 12 N -0.343 5.343 13 Si 0.743 3.257 14 H -0.192 1.192 15 H -0.200 1.200 16 H -0.183 1.183 17 N -0.152 5.152 18 N -0.006 5.006 19 H 0.077 0.923 20 H 0.090 0.910 21 H 0.083 0.917 22 H 0.181 0.819 23 H 0.148 0.852 24 H 0.146 0.854 25 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.436 0.219 -0.057 0.491 hybrid contribution 0.018 -1.197 0.019 1.197 sum -0.418 -0.978 -0.038 1.064 Atomic orbital electron populations 1.19967 0.88007 1.02266 1.01609 1.20696 0.94262 0.84336 1.15114 1.21893 0.88623 0.97583 1.10483 1.70311 1.21780 1.07713 1.22275 1.20885 0.87039 0.90874 1.13048 1.19931 0.96498 0.91222 1.01628 1.22825 0.97984 0.94766 1.01384 1.20709 0.86952 0.94617 0.91373 1.19354 0.93384 0.88987 1.43074 0.88526 1.26070 0.96036 1.00541 0.93823 1.69946 1.00505 1.35661 1.28183 0.86114 0.78941 0.81286 0.79377 1.19232 1.19975 1.18330 1.78041 1.19402 0.79275 1.38453 1.47534 1.05251 1.06973 1.40805 0.92280 0.91028 0.91689 0.81902 0.85158 0.85391 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.16 10.44 36.01 0.38 -0.78 15 2 C -0.02 -0.45 7.21 -81.51 -0.59 -1.04 15 3 C -0.03 -0.64 11.75 -17.90 -0.21 -0.85 15 4 N -0.50 -12.17 11.31 -12.64 -0.14 -12.31 15 5 C 0.13 3.33 7.87 -155.75 -1.23 2.10 15 6 C -0.07 -1.53 10.09 -39.41 -0.40 -1.93 15 7 C -0.14 -3.18 10.00 -37.29 -0.37 -3.55 15 8 C 0.21 5.54 6.79 -83.05 -0.56 4.97 15 9 C -0.41 -10.05 9.19 -37.75 -0.35 -10.39 15 10 H 0.10 2.11 7.85 -52.48 -0.41 1.70 15 11 C 0.06 1.45 5.50 -17.35 -0.10 1.36 15 12 N -0.72 -18.34 11.49 55.55 0.64 -17.70 15 13 Si 0.92 17.33 29.56 -169.99 -5.02 12.31 15 14 H -0.27 -5.00 7.11 56.52 0.40 -4.59 15 15 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 16 H -0.26 -4.74 7.11 56.52 0.40 -4.34 15 17 N -0.32 -9.01 9.49 33.22 0.32 -8.70 15 18 N -0.24 -6.46 4.02 -8.22 -0.03 -6.50 15 19 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 20 H 0.07 1.49 8.14 -51.93 -0.42 1.07 15 21 H 0.06 1.00 8.14 -51.93 -0.42 0.57 15 22 H 0.16 2.86 8.06 -52.49 -0.42 2.44 15 23 H 0.13 2.43 8.06 -52.48 -0.42 2.00 15 24 H 0.13 2.34 8.06 -52.49 -0.42 1.91 15 25 H 0.28 6.46 8.30 -40.82 -0.34 6.12 15 LS Contribution 230.76 15.07 3.48 3.48 Total: -1.00 -30.47 230.76 -6.28 -36.74 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -2.08 Total: 2.79 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -3.43 Total: -10.12 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.78 Total: -45.20 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.02 Total: 12.31 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -30.47 -6.28 -36.74 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260187798.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.355 kcal (2) G-P(sol) polarization free energy of solvation -30.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds