Wall clock time and date at job start Mon Mar 30 2020 02:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30992 * 1 3 3 Si 1.86797 * 119.99901 * 2 1 4 4 H 1.48503 * 109.47307 * 239.99923 * 3 2 1 5 5 H 1.48498 * 109.47360 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46976 * 120.00368 * 3 2 1 7 7 C 1.39858 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00195 * 179.97438 * 7 2 1 9 9 C 1.39508 * 119.99985 * 359.97438 * 7 2 1 10 10 N 1.33484 * 125.65692 * 359.97438 * 9 7 2 11 11 C 1.32087 * 109.86029 * 179.78139 * 10 9 7 12 12 C 1.39817 * 108.11079 * 0.37744 * 11 10 9 13 13 C 1.40025 * 133.28553 * 179.91555 * 12 11 10 14 14 C 1.36634 * 119.38312 * 179.68230 * 13 12 11 15 15 C 1.40645 * 119.62726 * 0.02562 * 14 13 12 16 16 N 1.39817 * 119.89006 * 180.02562 * 15 14 13 17 17 C 1.36182 * 120.21841 * 0.02562 * 15 14 13 18 18 N 1.36473 * 120.41600 * 359.95848 * 17 15 14 19 19 H 0.96999 * 119.99355 * 0.02562 * 1 2 3 20 20 H 1.08006 * 125.94320 * 180.29234 * 11 10 9 21 21 H 1.07999 * 120.30448 * 359.70465 * 13 12 11 22 22 H 1.07993 * 120.18179 * 180.02562 * 14 13 12 23 23 H 0.97002 * 119.99699 * 359.97438 * 16 15 14 24 24 H 0.96996 * 120.00034 * 180.02562 * 16 15 14 25 25 H 1.08003 * 119.79276 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2439 1.6177 0.0000 4 1 3.0977 1.6964 -1.2125 5 1 1.2789 2.7465 0.0006 6 1 3.0977 1.6963 1.2124 7 6 2.0092 -1.2112 -0.0005 8 1 3.0892 -1.2113 -0.0010 9 6 1.3116 -2.4194 -0.0005 10 7 -0.0168 -2.5509 0.0004 11 6 -0.3409 -3.8314 -0.0046 12 6 0.8407 -4.5789 -0.0004 13 6 1.1071 -5.9535 -0.0011 14 6 2.4035 -6.3851 -0.0026 15 6 3.4494 -5.4448 -0.0027 16 7 4.7780 -5.8804 -0.0047 17 6 3.1723 -4.1115 -0.0010 18 7 1.8794 -3.6745 0.0001 19 1 -0.4849 0.8401 -0.0004 20 1 -1.3441 -4.2314 -0.0096 21 1 0.2954 -6.6659 -0.0009 22 1 2.6237 -7.4424 -0.0035 23 1 4.9771 -6.8297 -0.0056 24 1 5.5005 -5.2333 -0.0045 25 1 3.9808 -3.3954 -0.0007 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260391778.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:01 Heat of formation + Delta-G solvation = 82.772197 kcal Electronic energy + Delta-G solvation = -12394.341793 eV Core-core repulsion = 10180.749621 eV Total energy + Delta-G solvation = -2213.592172 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.68504 -36.76844 -33.62198 -32.63474 -31.83434 -28.23817 -27.16832 -24.83574 -22.17720 -20.84464 -20.21236 -17.54078 -16.43037 -16.01536 -15.22397 -14.83938 -14.21702 -14.06632 -13.42031 -13.06375 -12.42413 -11.68691 -11.65967 -11.46666 -11.15725 -10.66243 -10.56469 -10.16025 -9.60324 -9.33971 -8.91876 -8.16016 -7.04913 -6.50503 -6.36215 -4.12067 2.01929 2.71884 3.12154 3.13972 3.14116 3.94192 4.16935 4.43168 4.77804 4.82164 5.55023 5.57985 5.77701 6.09579 6.20530 6.42004 6.65454 6.80779 7.00630 7.18435 7.28511 7.62245 7.88136 8.06260 8.23224 8.31704 8.39907 8.85956 9.22588 9.93930 10.41961 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.044789 B = 0.010912 C = 0.008801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.003984 B = 2565.421873 C = 3180.583718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.078 3.922 3 Si 0.917 3.083 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.446 4.446 8 H 0.080 0.920 9 C 0.356 3.644 10 N -0.470 5.470 11 C 0.013 3.987 12 C -0.136 4.136 13 C -0.007 4.007 14 C -0.235 4.235 15 C 0.156 3.844 16 N -0.886 5.886 17 C -0.034 4.034 18 N -0.401 5.401 19 H 0.275 0.725 20 H 0.149 0.851 21 H 0.121 0.879 22 H 0.109 0.891 23 H 0.391 0.609 24 H 0.390 0.610 25 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.461 -5.989 -0.016 8.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.485 4.485 8 H 0.098 0.902 9 C 0.119 3.881 10 N -0.186 5.186 11 C -0.150 4.150 12 C -0.241 4.241 13 C -0.028 4.028 14 C -0.258 4.258 15 C 0.053 3.947 16 N -0.429 5.429 17 C -0.161 4.161 18 N -0.079 5.079 19 H 0.086 0.914 20 H 0.167 0.833 21 H 0.139 0.861 22 H 0.127 0.873 23 H 0.218 0.782 24 H 0.217 0.783 25 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.664 -5.107 -0.011 6.916 hybrid contribution 1.407 -0.176 0.000 1.418 sum 6.071 -5.283 -0.011 8.048 Atomic orbital electron populations 1.70117 1.06827 1.28099 1.31672 1.25708 0.94921 1.00402 0.93578 0.86242 0.79761 0.80229 0.79639 1.19115 1.20186 1.19121 1.17998 0.93801 0.87640 1.49110 0.90170 1.20162 0.86914 0.82584 0.98484 1.71111 1.09563 1.15335 1.22596 1.22702 0.95283 0.90621 1.06427 1.19046 0.89980 0.89907 1.25169 1.20023 0.95693 0.92546 0.94503 1.20098 0.91904 0.97336 1.16451 1.16651 0.85029 0.91380 1.01658 1.41952 1.03417 1.08854 1.88711 1.20066 0.86512 0.93365 1.16125 1.42306 1.03559 1.07628 1.54394 0.91404 0.83345 0.86100 0.87307 0.78194 0.78338 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.56 11.86 55.55 0.66 -19.90 15 2 C 0.08 2.04 5.49 -17.30 -0.10 1.94 15 3 Si 0.92 19.12 29.56 -169.99 -5.02 14.09 15 4 H -0.27 -5.45 7.11 56.52 0.40 -5.04 15 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 7 C -0.45 -12.35 9.19 -38.50 -0.35 -12.70 15 8 H 0.08 2.06 7.69 -52.49 -0.40 1.66 15 9 C 0.36 10.21 7.47 -155.15 -1.16 9.05 15 10 N -0.47 -13.65 9.29 -11.94 -0.11 -13.77 15 11 C 0.01 0.34 12.01 -16.85 -0.20 0.14 15 12 C -0.14 -3.32 6.80 -83.96 -0.57 -3.89 15 13 C -0.01 -0.13 10.09 -39.49 -0.40 -0.53 15 14 C -0.24 -4.36 9.93 -39.25 -0.39 -4.75 15 15 C 0.16 2.97 6.72 -84.05 -0.56 2.41 15 16 N -0.89 -12.48 9.09 32.27 0.29 -12.19 15 17 C -0.03 -0.77 10.66 -16.23 -0.17 -0.94 15 18 N -0.40 -10.36 2.99 -60.01 -0.18 -10.54 15 19 H 0.28 6.90 8.30 -40.82 -0.34 6.56 15 20 H 0.15 3.18 8.06 -52.48 -0.42 2.76 15 21 H 0.12 1.97 8.06 -52.49 -0.42 1.55 15 22 H 0.11 1.66 8.06 -52.49 -0.42 1.24 15 23 H 0.39 4.49 8.85 -40.82 -0.36 4.13 15 24 H 0.39 4.80 8.83 -40.82 -0.36 4.44 15 25 H 0.13 2.75 7.90 -52.48 -0.41 2.33 15 LS Contribution 228.22 15.07 3.44 3.44 Total: -1.00 -31.98 228.22 -6.77 -38.76 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -1.94 Total: 9.38 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -3.91 Total: -9.27 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.66 Total: -56.39 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -31.98 -6.77 -38.76 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260391778.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.531 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds