Wall clock time and date at job start Mon Mar 30 2020 02:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38276 * 119.92180 * 2 1 4 4 C 1.38260 * 119.83145 * 180.02562 * 3 2 1 5 5 C 1.37879 * 120.22909 * 359.94249 * 4 3 2 6 6 C 1.39628 * 120.28028 * 0.02562 * 5 4 3 7 7 C 1.38120 * 119.92303 * 179.89532 * 2 1 3 8 8 C 1.51218 * 130.99605 * 0.02562 * 7 2 1 9 9 H 1.09004 * 110.42388 * 61.09697 * 8 7 2 10 10 C 1.50697 * 110.42496 * 298.74638 * 8 7 2 11 11 H 1.08002 * 119.99835 * 334.82560 * 10 8 7 12 12 C 1.37876 * 120.00499 * 154.82320 * 10 8 7 13 13 N 1.31521 * 119.99986 * 175.01215 * 12 10 8 14 14 Si 1.86796 * 119.99814 * 355.28844 * 12 10 8 15 15 H 1.48502 * 109.47129 * 274.90697 * 14 12 10 16 16 H 1.48499 * 109.47137 * 34.91074 * 14 12 10 17 17 H 1.48505 * 109.47179 * 154.90625 * 14 12 10 18 18 C 1.53750 * 104.54200 * 179.97438 * 8 7 2 19 19 N 1.39574 * 129.32283 * 180.02562 * 6 5 4 20 20 H 1.09003 * 109.47336 * 270.10862 * 1 2 3 21 21 H 1.09002 * 109.47408 * 30.10559 * 1 2 3 22 22 H 1.08999 * 109.47221 * 150.10550 * 1 2 3 23 23 H 1.07991 * 120.08525 * 359.92911 * 3 2 1 24 24 H 1.07997 * 119.88422 * 179.97438 * 4 3 2 25 25 H 1.07998 * 119.85835 * 179.97438 * 5 4 3 26 26 H 0.96998 * 119.99583 * 179.97438 * 13 12 10 27 27 H 1.09002 * 110.29943 * 118.92918 * 18 8 7 28 28 H 1.09003 * 110.30219 * 241.07147 * 18 8 7 29 29 H 0.96997 * 124.95639 * 359.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1984 0.0000 4 6 3.5793 1.1963 -0.0005 5 6 4.2716 0.0039 0.0001 6 6 3.5823 -1.2104 0.0008 7 6 2.1960 -1.1971 0.0022 8 6 1.7016 -2.6262 0.0043 9 1 1.1110 -2.8257 -0.8899 10 6 0.8874 -2.8992 1.2426 11 1 1.0502 -2.3142 2.1357 12 6 -0.0655 -3.8957 1.2354 13 7 -0.7071 -4.2000 2.3424 14 14 -0.4396 -4.8188 -0.3448 15 1 -1.4377 -4.0576 -1.1383 16 1 0.8080 -4.9727 -1.1354 17 1 -0.9865 -6.1600 -0.0171 18 6 2.9819 -3.4775 0.0055 19 7 4.0847 -2.5126 0.0020 20 1 -0.3634 0.0019 1.0277 21 1 -0.3634 0.8890 -0.5155 22 1 -0.3633 -0.8909 -0.5122 23 1 1.6569 2.1337 -0.0012 24 1 4.1189 2.1318 -0.0010 25 1 5.3516 0.0092 -0.0007 26 1 -1.3776 -4.9008 2.3373 27 1 3.0230 -4.0974 0.9011 28 1 3.0230 -4.1000 -0.8884 29 1 5.0264 -2.7450 0.0022 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260418040.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:12 Heat of formation + Delta-G solvation = 24.302711 kcal Electronic energy + Delta-G solvation = -12915.463701 eV Core-core repulsion = 10802.876445 eV Total energy + Delta-G solvation = -2112.587256 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.57291 -35.72958 -33.19836 -31.81370 -29.29731 -28.46241 -26.01425 -24.18761 -21.53476 -20.77573 -19.45244 -16.98790 -16.34574 -14.96073 -14.80979 -14.32835 -13.65694 -13.48476 -12.80750 -12.62166 -12.45917 -11.75929 -11.58278 -11.26782 -11.07725 -11.00348 -10.66605 -10.55000 -10.07159 -9.67201 -9.44217 -9.20523 -8.61493 -7.71624 -6.53226 -6.12508 -4.11988 2.19740 2.35063 3.23604 3.32681 3.33172 4.19569 4.35768 4.60045 5.15225 5.50932 5.61865 5.79981 5.95906 6.10225 6.16458 6.27381 6.33455 6.45043 6.55107 6.61332 6.72570 6.93725 7.09296 7.17172 7.27724 7.48145 7.58511 7.69546 7.99125 8.49756 8.58457 8.95232 9.48552 11.00129 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.038672 B = 0.012954 C = 0.010990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.855308 B = 2160.941749 C = 2547.150319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.027 4.027 3 C -0.185 4.185 4 C -0.091 4.091 5 C -0.202 4.202 6 C 0.190 3.810 7 C -0.124 4.124 8 C 0.047 3.953 9 H 0.047 0.953 10 C -0.496 4.496 11 H 0.076 0.924 12 C 0.074 3.926 13 N -0.895 5.895 14 Si 0.870 3.130 15 H -0.274 1.274 16 H -0.266 1.266 17 H -0.288 1.288 18 C 0.112 3.888 19 N -0.748 5.748 20 H 0.072 0.928 21 H 0.048 0.952 22 H 0.067 0.933 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.104 0.896 26 H 0.265 0.735 27 H 0.069 0.931 28 H 0.040 0.960 29 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.954 5.467 -6.038 10.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.027 4.027 3 C -0.205 4.205 4 C -0.109 4.109 5 C -0.226 4.226 6 C 0.086 3.914 7 C -0.128 4.128 8 C 0.028 3.972 9 H 0.065 0.935 10 C -0.534 4.534 11 H 0.094 0.906 12 C -0.129 4.129 13 N -0.533 5.533 14 Si 0.697 3.303 15 H -0.199 1.199 16 H -0.190 1.190 17 H -0.214 1.214 18 C -0.012 4.012 19 N -0.379 5.379 20 H 0.091 0.909 21 H 0.067 0.933 22 H 0.086 0.914 23 H 0.128 0.872 24 H 0.128 0.872 25 H 0.122 0.878 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 5.746 5.149 -5.947 9.741 hybrid contribution 0.250 -0.739 -0.678 1.033 sum 5.997 4.410 -6.624 9.964 Atomic orbital electron populations 1.20655 0.91583 1.01180 1.02559 1.19150 0.95726 0.91216 0.96651 1.20588 0.93881 0.96674 1.09384 1.20482 0.94103 0.96293 1.00065 1.20114 0.98301 0.90652 1.13495 1.18440 0.93215 0.85749 0.93981 1.20147 0.91961 0.95951 1.04758 1.18681 0.92912 0.87246 0.98379 0.93522 1.20777 1.17905 1.17937 0.96808 0.90615 1.25038 0.95663 0.96303 0.95847 1.69895 1.25667 1.31225 1.26497 0.86967 0.79263 0.79544 0.84489 1.19916 1.19032 1.21383 1.22540 0.87011 0.92088 0.99583 1.44834 1.07294 1.03147 1.82630 0.90901 0.93318 0.91360 0.87167 0.87200 0.87815 0.92535 0.91237 0.94221 0.76653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.97 9.45 36.01 0.34 -1.63 15 2 C -0.03 -0.54 5.88 -104.65 -0.61 -1.16 15 3 C -0.19 -3.30 9.71 -39.56 -0.38 -3.69 15 4 C -0.09 -1.52 10.02 -39.70 -0.40 -1.92 15 5 C -0.20 -3.61 10.07 -39.19 -0.39 -4.01 15 6 C 0.19 3.87 7.03 -83.67 -0.59 3.28 15 7 C -0.12 -2.75 5.41 -104.26 -0.56 -3.32 15 8 C 0.05 1.11 1.88 -92.28 -0.17 0.94 15 9 H 0.05 1.11 5.83 -51.93 -0.30 0.81 15 10 C -0.50 -13.52 8.25 -34.44 -0.28 -13.80 15 11 H 0.08 2.32 8.06 -52.49 -0.42 1.90 15 12 C 0.07 2.03 5.47 -17.82 -0.10 1.94 15 13 N -0.90 -26.50 13.96 55.43 0.77 -25.73 15 14 Si 0.87 20.62 26.89 -169.99 -4.57 16.05 15 15 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 16 H -0.27 -5.98 6.81 56.52 0.38 -5.59 15 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 18 C 0.11 2.38 7.37 -3.63 -0.03 2.36 15 19 N -0.75 -14.19 6.53 -58.12 -0.38 -14.57 15 20 H 0.07 1.45 8.14 -51.93 -0.42 1.03 15 21 H 0.05 0.77 8.08 -51.93 -0.42 0.35 15 22 H 0.07 1.39 7.70 -51.93 -0.40 0.99 15 23 H 0.11 1.68 8.06 -52.49 -0.42 1.26 15 24 H 0.11 1.49 8.06 -52.49 -0.42 1.07 15 25 H 0.10 1.59 8.06 -52.49 -0.42 1.16 15 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 27 H 0.07 1.54 7.70 -51.93 -0.40 1.14 15 28 H 0.04 0.79 8.12 -51.93 -0.42 0.36 15 29 H 0.40 6.16 8.96 -40.82 -0.37 5.79 15 LS Contribution 244.01 15.07 3.68 3.68 Total: -1.00 -29.44 244.01 -7.26 -36.70 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -3.58 Total: 4.89 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -3.19 Total: -21.02 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.39 Total: -40.30 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.57 Total: 16.05 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.44 -7.26 -36.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260418040.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.004 kcal (2) G-P(sol) polarization free energy of solvation -29.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds