Wall clock time and date at job start Mon Mar 30 2020 02:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38276 * 119.92180 * 2 1 4 4 C 1.38260 * 119.83145 * 180.02562 * 3 2 1 5 5 C 1.37879 * 120.22909 * 359.94249 * 4 3 2 6 6 C 1.39628 * 120.28028 * 0.02562 * 5 4 3 7 7 C 1.38120 * 119.92303 * 179.89532 * 2 1 3 8 8 C 1.51218 * 130.99605 * 0.02562 * 7 2 1 9 9 H 1.09004 * 110.42388 * 61.09697 * 8 7 2 10 10 C 1.50697 * 110.42496 * 298.74638 * 8 7 2 11 11 H 1.08002 * 119.99835 * 334.82560 * 10 8 7 12 12 C 1.37876 * 120.00499 * 154.82320 * 10 8 7 13 13 N 1.31521 * 119.99986 * 175.01215 * 12 10 8 14 14 Si 1.86796 * 119.99814 * 355.28844 * 12 10 8 15 15 H 1.48502 * 109.47129 * 274.90697 * 14 12 10 16 16 H 1.48499 * 109.47137 * 34.91074 * 14 12 10 17 17 H 1.48505 * 109.47179 * 154.90625 * 14 12 10 18 18 C 1.53750 * 104.54200 * 179.97438 * 8 7 2 19 19 N 1.39574 * 129.32283 * 180.02562 * 6 5 4 20 20 H 1.09003 * 109.47336 * 270.10862 * 1 2 3 21 21 H 1.09002 * 109.47408 * 30.10559 * 1 2 3 22 22 H 1.08999 * 109.47221 * 150.10550 * 1 2 3 23 23 H 1.07991 * 120.08525 * 359.92911 * 3 2 1 24 24 H 1.07997 * 119.88422 * 179.97438 * 4 3 2 25 25 H 1.07998 * 119.85835 * 179.97438 * 5 4 3 26 26 H 0.96998 * 119.99583 * 179.97438 * 13 12 10 27 27 H 1.09002 * 110.29943 * 118.92918 * 18 8 7 28 28 H 1.09003 * 110.30219 * 241.07147 * 18 8 7 29 29 H 0.96997 * 124.95639 * 359.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1984 0.0000 4 6 3.5793 1.1963 -0.0005 5 6 4.2716 0.0039 0.0001 6 6 3.5823 -1.2104 0.0008 7 6 2.1960 -1.1971 0.0022 8 6 1.7016 -2.6262 0.0043 9 1 1.1110 -2.8257 -0.8899 10 6 0.8874 -2.8992 1.2426 11 1 1.0502 -2.3142 2.1357 12 6 -0.0655 -3.8957 1.2354 13 7 -0.7071 -4.2000 2.3424 14 14 -0.4396 -4.8188 -0.3448 15 1 -1.4377 -4.0576 -1.1383 16 1 0.8080 -4.9727 -1.1354 17 1 -0.9865 -6.1600 -0.0171 18 6 2.9819 -3.4775 0.0055 19 7 4.0847 -2.5126 0.0020 20 1 -0.3634 0.0019 1.0277 21 1 -0.3634 0.8890 -0.5155 22 1 -0.3633 -0.8909 -0.5122 23 1 1.6569 2.1337 -0.0012 24 1 4.1189 2.1318 -0.0010 25 1 5.3516 0.0092 -0.0007 26 1 -1.3776 -4.9008 2.3373 27 1 3.0230 -4.0974 0.9011 28 1 3.0230 -4.1000 -0.8884 29 1 5.0264 -2.7450 0.0022 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260418040.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:12 Heat of formation + Delta-G solvation = 5.488911 kcal Electronic energy + Delta-G solvation = -12916.279528 eV Core-core repulsion = 10802.876445 eV Total energy + Delta-G solvation = -2113.403084 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.10743 -37.25628 -35.07670 -33.55756 -31.02785 -29.97683 -27.60173 -26.06524 -23.12722 -22.26372 -21.14329 -19.06837 -17.85651 -16.58533 -16.27015 -16.09692 -15.43641 -14.95033 -14.75018 -14.24017 -13.92660 -13.53004 -13.05927 -12.90264 -12.78115 -12.64308 -12.41501 -12.07755 -11.92076 -11.54986 -11.22746 -10.82377 -10.67454 -9.23517 -8.28011 -8.04188 -6.31463 0.72436 0.89067 1.35669 1.36783 1.47061 2.34823 2.71899 3.05970 3.12014 4.03178 4.24296 4.35268 4.38506 4.52934 4.64622 4.75062 4.84956 4.89400 4.96484 5.04246 5.13018 5.33784 5.46360 5.60210 5.71392 5.81573 5.98746 6.10100 6.32983 6.51182 6.72430 7.22648 7.32508 8.89111 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.038672 B = 0.012954 C = 0.010990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.855308 B = 2160.941749 C = 2547.150319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.049 4.049 3 C -0.185 4.185 4 C -0.082 4.082 5 C -0.200 4.200 6 C 0.172 3.828 7 C -0.169 4.169 8 C 0.044 3.956 9 H 0.044 0.956 10 C -0.490 4.490 11 H 0.023 0.977 12 C 0.019 3.981 13 N -0.946 5.946 14 Si 0.935 3.065 15 H -0.266 1.266 16 H -0.243 1.243 17 H -0.286 1.286 18 C 0.117 3.883 19 N -0.741 5.741 20 H 0.052 0.948 21 H 0.084 0.916 22 H 0.046 0.954 23 H 0.139 0.861 24 H 0.152 0.848 25 H 0.134 0.866 26 H 0.266 0.734 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.562 6.756 -7.974 12.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.050 4.050 3 C -0.205 4.205 4 C -0.100 4.100 5 C -0.223 4.223 6 C 0.069 3.931 7 C -0.173 4.173 8 C 0.025 3.975 9 H 0.062 0.938 10 C -0.528 4.528 11 H 0.042 0.958 12 C -0.179 4.179 13 N -0.586 5.586 14 Si 0.759 3.241 15 H -0.192 1.192 16 H -0.166 1.166 17 H -0.212 1.212 18 C -0.008 4.008 19 N -0.374 5.374 20 H 0.071 0.929 21 H 0.102 0.898 22 H 0.065 0.935 23 H 0.157 0.843 24 H 0.170 0.830 25 H 0.152 0.848 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 7.394 6.454 -7.895 12.596 hybrid contribution -0.199 -0.983 0.006 1.003 sum 7.195 5.471 -7.889 11.998 Atomic orbital electron populations 1.20602 0.91584 1.01869 1.01452 1.19468 0.96200 0.91973 0.97325 1.20956 0.94797 0.96652 1.08115 1.21007 0.93843 0.97673 0.97480 1.20530 0.99956 0.89849 1.11915 1.18713 0.92786 0.86959 0.94663 1.20256 0.93426 0.95601 1.08064 1.18592 0.93425 0.89495 0.96037 0.93815 1.20795 1.18523 1.16844 0.96624 0.95840 1.25851 0.95404 0.97343 0.99278 1.70049 1.26940 1.32526 1.29109 0.85919 0.80022 0.77929 0.80278 1.19153 1.16633 1.21187 1.22215 0.86843 0.92037 0.99674 1.44649 1.07670 1.02349 1.82782 0.92894 0.89769 0.93475 0.84302 0.82999 0.84784 0.92463 0.93011 0.92201 0.74559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.79 9.45 71.24 0.67 -3.11 15 2 C -0.05 -1.97 5.88 -19.88 -0.12 -2.08 15 3 C -0.19 -6.05 9.71 22.28 0.22 -5.84 15 4 C -0.08 -2.39 10.02 22.19 0.22 -2.17 15 5 C -0.20 -6.41 10.07 22.52 0.23 -6.18 15 6 C 0.17 6.74 7.03 38.34 0.27 7.01 15 7 C -0.17 -7.49 5.41 -19.63 -0.11 -7.60 15 8 C 0.04 2.08 1.88 -11.87 -0.02 2.06 15 9 H 0.04 2.08 5.83 -2.39 -0.01 2.06 15 10 C -0.49 -27.86 8.25 25.60 0.21 -27.65 15 11 H 0.02 1.53 8.06 -2.91 -0.02 1.51 15 12 C 0.02 1.06 5.47 84.65 0.46 1.52 15 13 N -0.95 -58.41 13.96 21.45 0.30 -58.11 15 14 Si 0.93 42.98 26.89 68.60 1.84 44.82 15 15 H -0.27 -11.86 7.11 99.48 0.71 -11.16 15 16 H -0.24 -10.18 6.81 99.48 0.68 -9.50 15 17 H -0.29 -12.98 7.11 99.48 0.71 -12.27 15 18 C 0.12 4.92 7.37 86.63 0.64 5.56 15 19 N -0.74 -26.95 6.53 -337.79 -2.20 -29.16 15 20 H 0.05 2.19 8.14 -2.39 -0.02 2.17 15 21 H 0.08 2.54 8.08 -2.39 -0.02 2.52 15 22 H 0.05 1.96 7.70 -2.39 -0.02 1.94 15 23 H 0.14 3.67 8.06 -2.92 -0.02 3.64 15 24 H 0.15 3.19 8.06 -2.91 -0.02 3.17 15 25 H 0.13 3.45 8.06 -2.91 -0.02 3.43 15 26 H 0.27 15.37 8.31 -92.71 -0.77 14.60 15 27 H 0.05 2.32 7.70 -2.39 -0.02 2.30 15 28 H 0.06 2.25 8.12 -2.39 -0.02 2.24 15 29 H 0.42 11.92 8.96 -92.71 -0.83 11.09 15 Total: -1.00 -66.09 244.01 2.90 -63.19 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.29 Total: 17.74 kcal Atomic # 6 Polarization: -41.16 SS G_CDS: 2.68 Total: -38.49 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -1.91 Total: -87.27 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.84 Total: 44.82 kcal Total: -66.09 2.90 -63.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260418040.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.676 kcal (2) G-P(sol) polarization free energy of solvation -66.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds