Wall clock time and date at job start Mon Mar 30 2020 02:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 119.99991 * 2 1 4 4 H 1.48492 * 109.47130 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46838 * 300.00474 * 3 2 1 6 6 H 1.48496 * 109.47094 * 60.00444 * 3 2 1 7 7 C 1.37872 * 120.00350 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00817 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.50694 * 109.47641 * 180.02562 * 9 7 2 11 11 C 1.40205 * 120.34107 * 269.98867 * 10 9 7 12 12 N 1.31218 * 120.38381 * 179.97438 * 11 10 9 13 13 C 1.34094 * 120.91924 * 0.03185 * 12 11 10 14 14 N 1.32518 * 131.94439 * 179.97438 * 13 12 11 15 15 C 1.33639 * 109.25319 * 180.02562 * 14 13 12 16 16 C 1.35008 * 108.62804 * 0.02562 * 15 14 13 17 17 N 1.36837 * 107.09429 * 359.97438 * 16 15 14 18 18 C 1.35583 * 120.33667 * 89.99795 * 10 9 7 19 19 H 0.97005 * 120.00721 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46997 * 60.00016 * 9 7 2 21 21 H 1.09006 * 109.46839 * 300.00311 * 9 7 2 22 22 H 1.08000 * 119.80302 * 359.97438 * 11 10 9 23 23 H 1.08003 * 125.68773 * 180.02562 * 15 14 13 24 24 H 1.07995 * 126.44944 * 180.02562 * 16 15 14 25 25 H 1.07999 * 120.46170 * 0.02562 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6903 -4.1830 -1.2106 12 7 3.5434 -5.1801 -1.2115 13 6 3.9918 -5.7044 -0.0617 14 7 4.8371 -6.6932 0.1908 15 6 4.9617 -6.8396 1.5133 16 6 4.1787 -5.9250 2.1241 17 7 3.5614 -5.2023 1.1397 18 6 2.6753 -4.1650 1.1696 19 1 -0.4851 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 2.3405 -3.7748 -2.1472 23 1 5.5850 -7.5681 2.0106 24 1 4.0621 -5.7889 3.1891 25 1 2.3326 -3.7648 2.1124 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260426191.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:57 Heat of formation + Delta-G solvation = 79.480251 kcal Electronic energy + Delta-G solvation = -12152.562374 eV Core-core repulsion = 9938.827452 eV Total energy + Delta-G solvation = -2213.734922 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.88742 -39.40916 -35.80106 -35.20690 -33.13582 -30.13667 -28.92607 -25.83436 -25.18427 -23.11985 -22.40128 -19.36909 -18.55276 -18.19866 -17.17831 -16.91297 -16.38118 -15.08362 -14.96137 -14.54264 -14.46874 -13.97655 -13.42878 -13.26182 -12.88331 -12.64727 -12.54438 -12.00000 -11.52567 -11.44692 -10.78115 -10.57473 -9.81464 -9.07765 -8.21362 -6.33070 -0.35478 0.16202 1.41330 1.45336 1.52661 1.55478 1.87190 2.40300 2.62926 2.69368 3.12448 3.48338 3.63754 3.92666 4.19072 4.44638 4.49413 4.71549 4.85451 5.23100 5.35974 5.54745 5.61028 5.70322 5.73674 6.11853 6.56693 6.78273 6.96684 7.36498 8.87735 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.058856 B = 0.007953 C = 0.007772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.622073 B = 3519.877571 C = 3601.692861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.017 3.983 3 Si 0.956 3.044 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.531 4.531 8 H 0.052 0.948 9 C 0.074 3.926 10 C -0.131 4.131 11 C 0.184 3.816 12 N -0.477 5.477 13 C 0.332 3.668 14 N -0.521 5.521 15 C 0.031 3.969 16 C -0.095 4.095 17 N -0.394 5.394 18 C 0.089 3.911 19 H 0.267 0.733 20 H 0.030 0.970 21 H 0.026 0.974 22 H 0.197 0.803 23 H 0.223 0.777 24 H 0.225 0.775 25 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.566 -6.856 5.430 9.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.182 4.182 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.569 4.569 8 H 0.070 0.930 9 C 0.036 3.964 10 C -0.136 4.136 11 C -0.002 4.002 12 N -0.189 5.189 13 C -0.016 4.016 14 N -0.245 5.245 15 C -0.121 4.121 16 C -0.226 4.226 17 N -0.070 5.070 18 C -0.042 4.042 19 H 0.076 0.924 20 H 0.048 0.952 21 H 0.044 0.956 22 H 0.214 0.786 23 H 0.240 0.760 24 H 0.242 0.758 25 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 5.274 -7.749 4.197 10.270 hybrid contribution -0.504 1.816 1.141 2.203 sum 4.769 -5.933 5.338 9.297 Atomic orbital electron populations 1.70024 1.07285 1.27991 1.50756 1.25690 0.95568 1.02412 0.94549 0.85533 0.78837 0.79635 0.77847 1.19536 1.20477 1.20373 1.21329 0.92974 0.91042 1.51592 0.92961 1.17960 0.91773 0.88292 0.98361 1.21003 1.01257 0.99063 0.92292 1.23658 0.88560 0.87946 1.00039 1.67886 1.13910 1.13059 1.24060 1.22211 0.99866 0.97182 0.82292 1.70604 1.18844 1.16739 1.18328 1.23270 1.00556 1.00416 0.87881 1.23402 1.03892 0.99290 0.96057 1.44124 1.29061 1.23045 1.10811 1.22318 0.91526 0.88205 1.02155 0.92429 0.95171 0.95589 0.78581 0.76026 0.75842 0.78755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.08 13.29 21.44 0.28 -49.79 15 2 C 0.02 0.90 5.46 84.65 0.46 1.36 15 3 Si 0.96 40.95 29.54 68.60 2.03 42.98 15 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 15 5 H -0.28 -11.79 7.11 99.48 0.71 -11.09 15 6 H -0.28 -11.65 7.11 99.48 0.71 -10.94 15 7 C -0.53 -26.64 9.09 25.60 0.23 -26.41 15 8 H 0.05 2.64 7.74 -2.91 -0.02 2.61 15 9 C 0.07 3.32 5.12 29.10 0.15 3.47 15 10 C -0.13 -5.00 5.05 -20.00 -0.10 -5.10 15 11 C 0.18 6.81 10.96 85.26 0.93 7.75 15 12 N -0.48 -19.28 10.48 -197.25 -2.07 -21.35 15 13 C 0.33 13.19 8.92 261.38 2.33 15.52 15 14 N -0.52 -19.61 11.31 -199.63 -2.26 -21.86 15 15 C 0.03 0.83 11.83 83.67 0.99 1.82 15 16 C -0.10 -2.43 11.77 83.17 0.98 -1.46 15 17 N -0.39 -13.33 2.95 -357.66 -1.05 -14.39 15 18 C 0.09 2.99 10.71 83.36 0.89 3.89 15 19 H 0.27 13.72 8.31 -92.70 -0.77 12.95 15 20 H 0.03 1.40 8.10 -2.39 -0.02 1.38 15 21 H 0.03 1.20 8.08 -2.38 -0.02 1.18 15 22 H 0.20 6.30 8.06 -2.91 -0.02 6.27 15 23 H 0.22 3.76 8.06 -2.91 -0.02 3.74 15 24 H 0.23 3.49 8.06 -2.91 -0.02 3.46 15 25 H 0.20 5.46 8.06 -2.91 -0.02 5.44 15 Total: -1.00 -64.29 232.27 5.00 -59.30 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: 1.20 Total: 4.28 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 6.87 Total: 0.84 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -5.09 Total: -107.40 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -64.29 5.00 -59.30 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260426191.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.777 kcal (2) G-P(sol) polarization free energy of solvation -64.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds