Wall clock time and date at job start Mon Mar 30 2020 02:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38223 * 119.59919 * 2 1 4 4 C 1.38575 * 118.99118 * 180.02562 * 3 2 1 5 5 C 1.38737 * 118.55838 * 359.97438 * 4 3 2 6 6 C 1.38180 * 119.34872 * 0.02562 * 5 4 3 7 7 N 1.31683 * 119.59760 * 180.02562 * 2 1 3 8 8 C 1.51483 * 109.58533 * 180.25048 * 6 5 4 9 9 C 1.54500 * 105.13373 * 342.43698 * 8 6 5 10 10 C 1.51219 * 130.69639 * 179.97438 * 5 4 3 11 11 H 1.09000 * 110.31170 * 316.07556 * 10 5 4 12 12 C 1.50708 * 110.31273 * 78.24921 * 10 5 4 13 13 H 1.07998 * 120.00100 * 118.54493 * 12 10 5 14 14 C 1.37881 * 119.99560 * 298.55062 * 12 10 5 15 15 N 1.31512 * 120.00442 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 119.99573 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46943 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.46996 * 119.99827 * 16 14 12 19 19 H 1.48495 * 109.46635 * 239.99801 * 16 14 12 20 20 H 1.09004 * 109.47273 * 269.97650 * 1 2 3 21 21 H 1.08995 * 109.47079 * 29.98186 * 1 2 3 22 22 H 1.08998 * 109.46923 * 149.98268 * 1 2 3 23 23 H 1.08002 * 120.50200 * 0.02562 * 3 2 1 24 24 H 1.07998 * 120.72006 * 180.02562 * 4 3 2 25 25 H 1.08998 * 110.29508 * 101.45788 * 8 6 5 26 26 H 1.08997 * 110.28874 * 223.58909 * 8 6 5 27 27 H 1.09005 * 111.02146 * 268.38289 * 9 8 6 28 28 H 1.08993 * 110.86346 * 144.85826 * 9 8 6 29 29 H 0.96993 * 120.00129 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1898 1.2018 0.0000 4 6 3.5754 1.1871 -0.0005 5 6 4.2257 -0.0384 -0.0005 6 6 3.4792 -1.2012 -0.0005 7 7 2.1574 -1.1450 -0.0005 8 6 4.4058 -2.3995 0.0058 9 6 5.7790 -1.8499 -0.4405 10 6 5.7006 -0.3720 -0.0015 11 1 6.2316 0.2623 -0.7114 12 6 6.2755 -0.2061 1.3817 13 1 6.7059 -1.0545 1.8929 14 6 6.2519 1.0289 1.9944 15 7 5.7282 2.0621 1.3717 16 14 6.9638 1.2344 3.7092 17 1 7.4876 -0.0704 4.1873 18 1 8.0672 2.2274 3.6713 19 1 5.9019 1.7092 4.6322 20 1 -0.3634 -0.0004 1.0277 21 1 -0.3633 0.8901 -0.5135 22 1 -0.3633 -0.8898 -0.5141 23 1 1.6514 2.1381 0.0004 24 1 4.1370 2.1097 -0.0001 25 1 4.4728 -2.8204 1.0090 26 1 4.0538 -3.1532 -0.6986 27 1 5.8987 -1.9271 -1.5212 28 1 6.5895 -2.3649 0.0751 29 1 5.7119 2.9309 1.8026 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260441339.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:19 Heat of formation + Delta-G solvation = 20.416783 kcal Electronic energy + Delta-G solvation = -12903.554371 eV Core-core repulsion = 10790.798609 eV Total energy + Delta-G solvation = -2112.755762 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.62610 -35.86099 -32.70402 -31.16686 -30.48762 -27.42112 -26.01304 -24.05661 -21.61314 -20.27565 -19.51485 -16.64578 -15.63677 -14.59841 -14.45718 -14.16674 -13.76921 -13.31444 -12.49195 -12.39685 -11.86331 -11.80159 -11.56173 -11.13293 -11.00766 -10.91731 -10.67533 -10.45380 -10.27332 -9.53597 -9.36684 -8.66336 -8.43591 -8.20459 -7.40433 -6.11655 -4.20344 2.18621 2.51861 3.23070 3.31365 3.34812 4.32979 4.83028 4.84902 5.16972 5.56803 5.75999 5.76636 5.97459 6.03884 6.08855 6.15330 6.24785 6.40768 6.50058 6.72734 6.77900 6.80909 6.97679 7.15181 7.39699 7.50942 7.81828 7.82801 7.92041 8.21078 8.82018 9.02279 9.44253 10.90601 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.034048 B = 0.012925 C = 0.010666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.174740 B = 2165.753683 C = 2624.526759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.088 3.912 3 C -0.194 4.194 4 C -0.040 4.040 5 C -0.079 4.079 6 C 0.087 3.913 7 N -0.498 5.498 8 C -0.053 4.053 9 C -0.116 4.116 10 C 0.076 3.924 11 H 0.037 0.963 12 C -0.502 4.502 13 H 0.063 0.937 14 C 0.061 3.939 15 N -0.885 5.885 16 Si 0.896 3.104 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.284 1.284 20 H 0.064 0.936 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.116 0.884 24 H 0.157 0.843 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.457 -2.191 -2.526 5.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C -0.215 4.215 4 C -0.066 4.066 5 C -0.082 4.082 6 C -0.050 4.050 7 N -0.208 5.208 8 C -0.091 4.091 9 C -0.154 4.154 10 C 0.057 3.943 11 H 0.055 0.945 12 C -0.539 4.539 13 H 0.082 0.918 14 C -0.140 4.140 15 N -0.523 5.523 16 Si 0.724 3.276 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.211 1.211 20 H 0.083 0.917 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.134 0.866 24 H 0.174 0.826 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.958 -2.774 -2.492 6.204 hybrid contribution 0.666 1.165 1.191 1.794 sum -4.292 -1.608 -1.301 4.764 Atomic orbital electron populations 1.20513 0.90364 1.02017 1.01805 1.20722 0.95670 0.88538 1.00065 1.21824 0.95623 0.97914 1.06110 1.21771 0.92344 1.00262 0.92191 1.21883 0.99371 0.92664 0.94270 1.21818 0.88828 0.96478 0.97872 1.66453 1.09857 1.29730 1.14760 1.20806 0.93050 0.93888 1.01359 1.22406 0.95410 0.98696 0.98839 1.18305 0.88059 0.90681 0.97240 0.94466 1.21165 1.37357 0.95010 1.00402 0.91845 1.25004 0.95031 0.95937 0.98055 1.69796 1.44402 1.00401 1.37658 0.86462 0.78786 0.78274 0.84117 1.19643 1.20831 1.21056 0.91739 0.91771 0.91592 0.86643 0.82554 0.90526 0.92028 0.93041 0.91105 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.38 10.17 36.01 0.37 -1.02 15 2 C 0.09 1.82 6.78 -82.66 -0.56 1.26 15 3 C -0.19 -4.08 9.75 -39.46 -0.38 -4.46 15 4 C -0.04 -0.95 8.90 -39.27 -0.35 -1.30 15 5 C -0.08 -1.96 5.13 -104.20 -0.54 -2.49 15 6 C 0.09 2.02 7.32 -82.03 -0.60 1.42 15 7 N -0.50 -11.28 10.26 -5.45 -0.06 -11.34 15 8 C -0.05 -1.07 6.77 -26.71 -0.18 -1.25 15 9 C -0.12 -2.35 6.59 -25.23 -0.17 -2.51 15 10 C 0.08 1.87 2.82 -91.95 -0.26 1.61 15 11 H 0.04 0.97 8.14 -51.93 -0.42 0.55 15 12 C -0.50 -13.32 8.53 -34.43 -0.29 -13.62 15 13 H 0.06 1.66 7.57 -52.49 -0.40 1.26 15 14 C 0.06 1.64 5.32 -17.82 -0.09 1.55 15 15 N -0.88 -23.90 9.71 55.43 0.54 -23.36 15 16 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 15 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 20 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 21 H 0.06 0.84 8.08 -51.93 -0.42 0.42 15 22 H 0.07 0.97 8.14 -51.93 -0.42 0.55 15 23 H 0.12 2.05 8.06 -52.49 -0.42 1.63 15 24 H 0.16 3.88 6.09 -52.49 -0.32 3.56 15 25 H 0.08 1.52 8.14 -51.93 -0.42 1.10 15 26 H 0.06 1.10 8.14 -51.93 -0.42 0.67 15 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 28 H 0.07 1.36 7.74 -51.93 -0.40 0.96 15 29 H 0.26 6.75 8.31 -40.82 -0.34 6.41 15 LS Contribution 243.61 15.07 3.67 3.67 Total: -1.00 -28.56 243.61 -7.56 -36.12 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -3.63 Total: -0.14 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -3.06 Total: -20.82 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.48 Total: -34.70 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.56 -7.56 -36.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260441339.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.540 kcal (2) G-P(sol) polarization free energy of solvation -28.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds